Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq783 102 8e-17 seq1551 95.1 1e-14 seq2315 93.3 4e-14 >seq783 Length=580412 Score = 102 bits (112), Expect = 8e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || || |||||||| || || || || | || | ||||| Sbjct 391333 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCA-TCTTC 391275 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || |||||||||||| |||| ||||| |||||||| ||||| ||||| || || || | Sbjct 391274 AAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATC-CT 391216 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||| | | ||| | |||||| | | ||| || || | || | || | Sbjct 391215 GAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTT 391156 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||||| || || ||||| || |||||| Sbjct 391155 TGCCAGTCAAAGTCTTGACGAAAATCTGCATA 391124 >seq1551 Length=444118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || |||||||||||| |||| ||||| |||||||| ||||||||||| | || || | Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||||| | ||| | |||||| | | ||| || || | || | || ||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || || ||||| || |||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCATA 25340 >seq2315 Length=138946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||||||||||||||| || | ||||| || | ||||| |||||||| || || | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCA-TCTTCCAGCTGTTTCCCTGCGAAA 26909 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTG 139692 |||| | |||||||| ||||| || || |||||||| ||| |||||| ||||| | Sbjct 26908 ATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTC-TTGAATTTTTGCTTTTACATT 26850 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | || || | || |||||||||| ||| | || || || || | ||||| || Sbjct 26849 CTCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCAC 26790 Query 139753 GAATATTTGCAT 139764 || || ||||| Sbjct 26789 AAAAATCTGCAT 26778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| || || | ||||||||||| ||||| || ||||| Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAA 33160 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||||||||| |||||| | || || | ||||| || ||||| Sbjct 33159 AGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGG 33100 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | |||| ||||| | || | || || | || ||||| Sbjct 33099 ATTCCCTCCTTATC-TTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCAC 33041 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || || || || || ||||| Sbjct 33040 TTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495910269766400