Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq714 131 2e-25 seq211 98.7 1e-15 seq263 91.5 2e-13 >seq714 Length=734366 Score = 131 bits (144), Expect = 2e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||| | ||||||| || || | ||| ||||| || || | || | Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| ||| || ||||| || || || ||||| ||||| | Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 50158 | || | |||||| ||||| | || | |||| | ||||||| | |||||||| | Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 | |||||||||||||| ||||| ||||| || |||||||| | ||||| Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || ||||| || ||||||||||| || || || | || |||||| | |||| ||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | |||||||| || ||||| || |||||||| || || | ||| ||| ||| Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||| |||| | ||| ||||| | ||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961 Score = 96.9 bits (106), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 ||| |||| |||| |||||||||||| ||||||| ||||| || || || ||||| ||| Sbjct 55181 ATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTAC 55239 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || | ||| || || ||||| || || || ||||| |||||||| ||||||| Sbjct 55240 ATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 49765 TTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATC 49824 ||| || | || | |||| || |||||||| || ||||||| || || | |||| Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149 Query 49825 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCA 49884 | | || ||||| || || | | || || | ||| |||||||||| ||||||||| Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209 Query 49885 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAA 49944 || | ||| ||||| | ||||| | | || || ||| ||||| || | ||| Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269 Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || || ||||| | |||||| ||||| || |||||||||| Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309 >seq211 Length=1809889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 |||||| ||||| || || ||||| || | || ||||| || || | ||| |||||||| Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 |||||| | ||| || || || ||| |||| || || ||| | |||||||| || || Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891 Query 80808 TGTTACTCCATTATATA 80824 |||||||||| ||||| Sbjct 904890 TGTTACTCCAGCATATA 904874 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||| || || || || | |||| || ||||| || |||||||||||||| || | | Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 | ||||| || | ||||| || || | || ||| ||| | || | ||| | Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600 Query 80209 A-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 | ||| ||||| ||||| || || ||| |||||||| || ||| |||| | || || Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCAT 80297 |||||| ||||| ||||| || || |||| Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||| |||| ||||| | | ||| || || | || ||||| || | Sbjct 922623 TACCTGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAA 922564 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 |||||||| |||||||| ||||||||||| || ||||| ||||| || || Sbjct 922563 AGATTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGC 922513 >seq263 Length=1740189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 97716 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 97775 ||||| || || || |||| |||||| |||||||| || || ||||| || || Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435 Query 97776 GCCGCACTTGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGAATCTTATTCCA 97835 || ||| | ||||| ||||||||| | ||| | ||| |||||||| ||||| Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375 Query 97836 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAAGCTTCC 97895 | ||||| | || || ||| ||| |||||||||||||| || | | ||| ||| | Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315 Query 97896 TTTTCTAAACGATTAGGTGCAGAAACCGAGATA 97928 | | | || || ||||| | ||||| ||| || Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718046208498880