Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq714 131 2e-25
seq211 98.7 1e-15
seq263 91.5 2e-13
>seq714
Length=734366
Score = 131 bits (144), Expect = 2e-25
Identities = 166/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| || || ||| | ||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| || || || ||||| ||| || ||||| || || || ||||| ||||| |
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 50158
| || | |||||| ||||| | || | |||| | ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206
| |||||||||||||| ||||| ||||| || |||||||| | |||||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| ||||| || ||||||||||| || || || | || |||||| | |||| |||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399
| | |||||||| || ||||| || |||||||| || || | ||| ||| |||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432
||||| |||| | ||| ||||| | |||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961
Score = 96.9 bits (106), Expect = 5e-15
Identities = 90/113 (80%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499
||| |||| |||| |||||||||||| ||||||| ||||| || || || ||||| |||
Sbjct 55181 ATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTAC 55239
Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|| | ||| || || ||||| || || || ||||| |||||||| |||||||
Sbjct 55240 ATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292
Score = 95.1 bits (104), Expect = 2e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 49765 TTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATC 49824
||| || | || | |||| || |||||||| || ||||||| || || | ||||
Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149
Query 49825 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCA 49884
| | || ||||| || || | | || || | ||| |||||||||| |||||||||
Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209
Query 49885 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAA 49944
|| | ||| ||||| | ||||| | | || || ||| ||||| || | |||
Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269
Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984
|| || ||||| | |||||| ||||| || ||||||||||
Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309
>seq211
Length=1809889
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747
|||||| ||||| || || ||||| || | || ||||| || || | ||| ||||||||
Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951
Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807
|||||| | ||| || || || ||| |||| || || ||| | |||||||| || ||
Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891
Query 80808 TGTTACTCCATTATATA 80824
|||||||||| |||||
Sbjct 904890 TGTTACTCCAGCATATA 904874
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
||||| || || || || | |||| || ||||| || |||||||||||||| || | |
Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
| ||||| || | ||||| || || | || ||| ||| | || | ||| |
Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600
Query 80209 A-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267
| ||| ||||| ||||| || || ||| |||||||| || ||| |||| | || ||
Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541
Query 80268 ATAGATGCCCTCTATGCTATCATCAATCAT 80297
|||||| ||||| ||||| || || ||||
Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511
Score = 87.8 bits (96), Expect = 3e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
||| ||||||||||| |||| ||||| | | ||| || || | || ||||| || |
Sbjct 922623 TACCTGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAA 922564
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169
|||||||| |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 922563 AGATTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGC 922513
>seq263
Length=1740189
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 97716 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 97775
||||| || || || |||| |||||| |||||||| || || ||||| || ||
Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435
Query 97776 GCCGCACTTGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGAATCTTATTCCA 97835
|| ||| | ||||| ||||||||| | ||| | ||| |||||||| |||||
Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375
Query 97836 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAAGCTTCC 97895
| ||||| | || || ||| ||| |||||||||||||| || | | ||| ||| |
Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315
Query 97896 TTTTCTAAACGATTAGGTGCAGAAACCGAGATA 97928
| | | || || ||||| | ||||| ||| ||
Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718046208498880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |