Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq714 131 2e-25
seq211 104 3e-17
seq263 91.5 2e-13
>seq714
Length=734366
Score = 131 bits (144), Expect = 2e-25
Identities = 166/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||| || ||| ||||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || || ||||| || || ||||| || || || ||||| ||||| |
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263
| | | |||||| ||||| ||| | |||| | ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311
| |||||||||||||| ||||| ||||| || |||||||| | |||||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129
Score = 123 bits (136), Expect = 3e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||| ||| ||||||||| || | ||||| |||||||||||||||| ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| ||||| || ||||||||||| || || || || ||||||||| | |||| |||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504
| | ||||| || || ||||| || |||||||| || || | ||| ||| |||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537
|||| |||| || ||| | ||| | |||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961
Score = 111 bits (122), Expect = 2e-19
Identities = 93/113 (82%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604
||| |||| |||| ||||||||||||| | ||||| ||||| ||||| || ||||| |||
Sbjct 55181 ATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTAC 55239
Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657
|| | ||| ||||| ||||| ||||| || ||||| |||||||| |||||||
Sbjct 55240 ATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292
Score = 86.0 bits (94), Expect = 8e-12
Identities = 102/138 (74%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTTT 41775
|||||| ||| |||| || | ||| ||| ||||||| || ||| || || |||
Sbjct 38268 TTAAAAATCAGCATCCAATGTGAAAACATTTTCTTCTTTCTTAGCCATCACACCACATTT 38327
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|| || || || || || ||||| ||||| ||||| |||||||||||||| | |||
Sbjct 38328 CTGATACTCTCCAACTTTCTTCTCGAAGAAATTCGTCTTGCCTTCCAATGATATGTGTTC 38387
Query 41836 CATGAAATCAAACGGATT 41853
|||||| || ||||||||
Sbjct 38388 CATGAAGTCGAACGGATT 38405
>seq211
Length=1809889
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830
|||||| ||||| || || ||||| || | || ||||| || || ||||| ||||||||
Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951
Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890
|||||| | ||| || || || ||| |||| || || ||| | |||||||| || ||
Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891
Query 72891 TGTTACTCCATTATATA 72907
|||||||||| |||||
Sbjct 904890 TGTTACTCCAGCATATA 904874
Score = 84.2 bits (92), Expect = 3e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
||||| || || || || | |||| || ||||| || |||||||||||||| || | |
Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291
| ||||| || ||||| || || | || ||| ||| | || | ||| | |
Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600
Query 72292 A-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350
| ||| ||||| ||||| || || ||| |||||||| || ||| |||| | || ||
Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541
Query 72351 ATAGATGCCCTCTATACTATCATCCATCAT 72380
|||||| ||||| || || || || ||||
Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511
>seq263
Length=1740189
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 89775 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAGATAGTTATAGTA 89834
||||| || || || |||| |||||| |||||||| || |||||||| || ||
Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435
Query 89835 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATATTGGATCTTATTCCA 89894
|| ||| | ||||| ||||||||| | ||| | |||| || ||||| |||||
Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375
Query 89895 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAGGCTTCC 89954
| ||||| | || || ||| ||| |||||||||||||| || | | ||| ||| |
Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315
Query 89955 TTTTCCAAACGATTGGGTACAGAAACCGAGATA 89987
| | | || || | ||| | ||||| ||| ||
Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670931213961920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |