Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2315 109 6e-19 seq783 109 6e-19 seq1551 95.1 1e-14 >seq2315 Length=138946 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 143054 ||||||||||||||||||| || ||||| || || || || ||||||||| ||| Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 143055 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 143114 | || | ||||||||| ||||| || ||||| ||||| || ||| ||||| | || Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 143115 CCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 143174 | | || || | ||||| ||||| | || | || || || ||||| || || |||| Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 143175 ATATTTGCAT 143184 | |||||||| Sbjct 27140 AGATTTGCAT 27131 >seq783 Length=580412 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || ||||| || || |||||||| || || || | || | ||||| ||||||||||| Sbjct 391321 GTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCA-TCTTCAAGTTGTTTACC 391263 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| ||||| |||||||| ||||| ||||| || || || |||||| ||| Sbjct 391262 AGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGAATTTTGGCTTT 391203 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | ||||| | | || ||||| | ||| | || ||||| ||||| || Sbjct 391202 CACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGT 391143 Query 143167 TTTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 391142 CTTGACGAAAATCTGCATA 391124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCG--AGTCTTCGAGT 143038 ||| | |||||||||||| || |||||||||| || | | | ||| ||| ||||| Sbjct 390332 ATGGAGTGTAGATTCTTTCTGAATGTTGTAAT--CTGAAAGAGTTCGGCCGTCCTCGAGC 390275 Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || || |||||| |||||| | || || || || || |||||||| ||||| |||| Sbjct 390274 TGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATT 390215 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 || ||| | | || | ||| |||| | || ||||| | ||| | || || ||| Sbjct 390214 TTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCG 390155 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | |||||||| || || ||||| Sbjct 390154 GTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 ||||| || | ||||| ||||||||||||||| |||||||| ||| || || | || | Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || || || || ||| |||||| | || || || || || |||||||| || Sbjct 390055 -TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTT 389997 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||| || ||| | | ||| | ||||| | || || ||||| | ||| | Sbjct 389996 ATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGAT 389937 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || | || || || || || ||||| Sbjct 389936 GGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 >seq1551 Length=444118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||||||||||||| |||| ||||| |||||||| ||||||||||| | || || Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||||| | ||| | ||||| | | || ||||| | ||| | || ||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||| || |||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCATA 25340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506857276237440