Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq1690 93.3 8e-14 seq1164 86.0 1e-11 >seq1690 Length=1574822 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 271755 GGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTATCACG 271814 ||| |||||||| ||| | |||| ||||| ||||||||| ||||||||| | | Sbjct 544434 GGAATCGAACCACCGACACGCAGATTTTCAGTCTGCTGCTCTACCAACTGAGCTACCGAG 544375 Query 271815 GAATTAAA--TGGCGCGCCCAAGGGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGG 271872 | | ||| ||||| || | ||||||||||||| |||| | ||||||||||| | Sbjct 544374 GCAAAAAAATTGGCGATCCGGAAGGGACTCGAACCCTCGACCTCTAGCGTGACAGGCTAG 544315 Query 271873 TATTCTAACCAACTGAACTA 271892 |||||||||||||||||| Sbjct 544314 CGTTCTAACCAACTGAACTA 544295 >seq1164 Length=549247 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 271836 GGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGGTATTCTAACCAACTGAACTA 271892 ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| Sbjct 388066 GGGACTCGAACCCGCGACCACCTGCGTGACAGGCAGGTATTCTAACCAACTGAACTA 388122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896662838046080