Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq783 113 3e-20
seq2315 104 2e-17
>seq783
Length=580412
Score = 113 bits (124), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233
|||| ||||| ||||| || || |||| ||||||| |||||||||||||| | |
Sbjct 387247 CTTTCTGTATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAGA 387188
Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293
| || | |||||||| |||||||| |||||||| ||| || ||| || | |
Sbjct 387187 TTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTCT 387128
Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353
| |||||||| | ||| || |||| ||| || ||||| |||||||| || || || |
Sbjct 387127 CAATGGTATCTGAAGCTTCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCACGA 387068
Query 15354 AAATTTGCA---TATTTGAAAAT 15373
|||| |||| | |||||||||
Sbjct 387067 AAATCTGCATCCTGTTTGAAAAT 387045
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| | || | ||| || || || ||||| || |||||||||||
Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| ||| |||| || | || |||||||| | ||||| | |||||||| |||
Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||||||| || ||| | || || ||||| | || ||
Sbjct 390235 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACT 390176
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| ||||| || || ||||||||||||||||| |||||
Sbjct 390175 TCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129
>seq2315
Length=138946
Score = 104 bits (114), Expect = 2e-17
Identities = 132/178 (74%), Gaps = 3/178 (2%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | ||||| || ||| | ||||| | || || || ||||| || ||||||
Sbjct 26932 TCTTCCAGCTGTTTCCCTGCGAAAATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTG 26873
Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| |||||| ||| |||||| | || |||||||| ||| || || | ||| ||
Sbjct 26872 TCTTGAATTTTTGCT-TTTACATTCTCAATGGTATCAGATGGTTCCACCTCAAGGGTTAT 26814
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATA 15385
||||||||| || |||||||| |||||||| ||||| | ||||| |||| |||||||
Sbjct 26813 GGTTTTACCAGTAAGAGTTTTCACAAAAATCTGCATCCTGGAAAACAAAA-TTTAATA 26757
Score = 96.9 bits (106), Expect = 3e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| || |||||||| || | || || || || || || ||| ||||||||||||
Sbjct 27674 TCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTG 27615
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| ||||||| |||| |||||||| |||||| || | || ||
Sbjct 27614 TCTTGAATCTTTGC-CTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 27556
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||||| ||||| || || || ||||| || ||||||
Sbjct 27555 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCATA 27519
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| || |||||||| || | || || || || || || ||| ||||||||||||
Sbjct 28176 TCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTG 28117
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| |||||| ||||||| |||| |||||||| |||||| || | || |||
Sbjct 28116 TCTTGAATTTTTGCCTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGATG 28057
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| ||||| || || || ||||| || ||||||
Sbjct 28056 GTTTTGCCTGTGAGGGTCTTCACAAATATCTGCATA 28021
Score = 95.1 bits (104), Expect = 9e-15
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| || ||||| || || | || || || || ||||| ||| ||||||||||||
Sbjct 29115 TCTTCCAACTGTTTTCCTGCAAAAATTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTG 29056
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| ||||||| |||| |||||||| |||||| || | || ||
Sbjct 29055 TCTTGAATCTTTGC-CTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 28997
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||| ||||| || || || ||||| || |||||
Sbjct 28996 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCAT 28961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362069766649272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |