Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq783 113 3e-20 seq2315 104 2e-17 >seq783 Length=580412 Score = 113 bits (124), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| ||||| ||||| || || |||| ||||||| |||||||||||||| | | Sbjct 387247 CTTTCTGTATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAGA 387188 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | || | |||||||| |||||||| |||||||| ||| || ||| || | | Sbjct 387187 TTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTCT 387128 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| | ||| || |||| ||| || ||||| |||||||| || || || | Sbjct 387127 CAATGGTATCTGAAGCTTCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCACGA 387068 Query 15354 AAATTTGCA---TATTTGAAAAT 15373 |||| |||| | ||||||||| Sbjct 387067 AAATCTGCATCCTGTTTGAAAAT 387045 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || | ||| || || || ||||| || ||||||||||| Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| |||| || | || |||||||| | ||||| | |||||||| ||| Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| || ||| | || || ||||| | || || Sbjct 390235 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACT 390176 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || || ||||||||||||||||| ||||| Sbjct 390175 TCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 >seq2315 Length=138946 Score = 104 bits (114), Expect = 2e-17 Identities = 132/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||||| || ||| | ||||| | || || || ||||| || |||||| Sbjct 26932 TCTTCCAGCTGTTTCCCTGCGAAAATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTG 26873 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| |||||| | || |||||||| ||| || || | ||| || Sbjct 26872 TCTTGAATTTTTGCT-TTTACATTCTCAATGGTATCAGATGGTTCCACCTCAAGGGTTAT 26814 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATA 15385 ||||||||| || |||||||| |||||||| ||||| | ||||| |||| ||||||| Sbjct 26813 GGTTTTACCAGTAAGAGTTTTCACAAAAATCTGCATCCTGGAAAACAAAA-TTTAATA 26757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || |||||||| || | || || || || || || ||| |||||||||||| Sbjct 27674 TCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTG 27615 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||||||| |||| |||||||| |||||| || | || || Sbjct 27614 TCTTGAATCTTTGC-CTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 27556 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| ||||| || || || ||||| || |||||| Sbjct 27555 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCATA 27519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || |||||||| || | || || || || || || ||| |||||||||||| Sbjct 28176 TCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTG 28117 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||||||| |||| |||||||| |||||| || | || ||| Sbjct 28116 TCTTGAATTTTTGCCTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGATG 28057 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || || || ||||| || |||||| Sbjct 28056 GTTTTGCCTGTGAGGGTCTTCACAAATATCTGCATA 28021 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || ||||| || || | || || || || ||||| ||| |||||||||||| Sbjct 29115 TCTTCCAACTGTTTTCCTGCAAAAATTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTG 29056 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||||||| |||| |||||||| |||||| || | || || Sbjct 29055 TCTTGAATCTTTGC-CTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 28997 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || || || ||||| || ||||| Sbjct 28996 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCAT 28961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362069766649272