Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq2760 98.7 1e-15 seq1772 93.3 5e-14 seq1690 91.5 2e-13 seq3436 89.7 6e-13 seq3099 86.0 7e-12 seq1535 84.2 2e-11 >seq2760 Length=692328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 7021 GTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTT 7080 ||| ||||||| || || || |||||||||||||| | | | || | |||||| Sbjct 110161 GTTAGCTTGTGCTCCTGAGTGCGGTTGAACGTTTGCCCATTCAGCCCCGAAGATTTCTTT 110102 Query 7081 AGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCG 7140 ||| ||||| |||| | ||| ||| || | | |||| || |||||||| || Sbjct 110101 TAGACGGTCAATAGCCAATTGTTCGCTTTGGTCTACAACTTCGCAACCACCATAATAACG 110042 Query 7141 TTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 ||| ||||||||||| || ||||| || ||||| || |||||| || | |||||| Sbjct 110041 TTTCCCCGGATATCCTTCGGCATATTTATTGGTTAACCATGAACCCATGGCCTGCATAAC 109982 Query 7201 ATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 | || |||| ||||||| || ||||||| Sbjct 109981 CTGATCACTCACAAAGTTTTCTGAAGCAATCA 109950 >seq1772 Length=227458 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 6465 CATAGTCTTCGCGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAA 6524 |||||||||||| ||||||||| |||||| ||||||||| || || || ||||| || Sbjct 182265 CATAGTCTTCGCTGAGAGCTTCGCCAAAAGCAACTGCTTTAGCAGCAATTACATGCTCAA 182206 Query 6525 GCGGGCCGCCTTGAATACCCGGGAAGATAGCAGAATTTA 6563 |||| || || ||||| || ||||| | |||||||| || Sbjct 182205 GCGGTCCACCCTGAATTCCGGGGAAAACAGCAGAATCTA 182167 >seq1690 Length=1574822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGA-CATAGCGAGAACCGAATCACCCGGCTT 6996 ||||| |||||||| |||||| | ||||| ||| | || | || ||| || || | Sbjct 1043191 CCGTGTGTGAGATGCCCGCCGT-GCGCAAGGTTCATGCCCAGTATCGTATCCCCGGGGGT 1043249 Query 6997 CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGC 7056 || | || ||||| || |||||| | || |||| || | ||| ||||| || Sbjct 1043250 AAGCAAGGCAAAATAAACGGCAAAGTTTGCGTTTGCACCGCTGTGCGTTTGCACGTTGGC 1043309 Query 7057 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 || || | ||||| |||||||| || || ||||| || | || || ||| | Sbjct 1043310 AAATTTCGCCCCAAACAACTCTTTAGCGCGTTCTATTGCAAGTGTTTCTGCCTCGTCGAC 1043369 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAA 7176 | |||| || || ||||| | ||| |||||||| ||||| |||||||||||||| || Sbjct 1043370 AAATTCGCACCCTCCGTAATATCTTTTCCCCGGATAGCCCTCTGCATACTTGTTGGTCAA 1043429 Query 7177 AA 7178 || Sbjct 1043430 AA 1043431 >seq3436 Length=2346199 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 66009 ACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCA 66068 || ||||||||||||||||| || |||||||| ||||||||||| |||| | || ||| Sbjct 1583736 ACCGCATAACCGGAAACACGTATTGTTAGTTGCGGATATTTTTCGGGATGTTCCATAGCA 1583795 Query 66069 TCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTT 66120 |||||||| | | | || ||| |||||||| || | || ||| | |||| Sbjct 1583796 TCTTCCAGCATTTCCCTGTTAAGCACATTTACATTTAAGTGGTGAGCTCCTT 1583847 >seq3099 Length=1637421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65381 GTGGTCCCTATTGGATTCGAACCAATGACCAACGACTTAGAACGACGTTGCTCTGTCCAG 65440 ||| |||| ||||||||||||||||||||| || ||||||| | |||||||| ||||| Sbjct 1584930 GTGATCCCGATTGGATTCGAACCAATGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAG 1584989 Query 65441 CTGAGCTAAGAGACC 65455 |||||||| | |||| Sbjct 1584990 CTGAGCTACGGGACC 1585004 >seq1535 Length=1988416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/256 (67%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 6975 CGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAAC 7034 |||||| | ||| ||||| |||| | || | |||| || ||||| |||| | Sbjct 1827284 CGAGAAATGTATCGCCCGGATTCATTATAGCCAGAAAAACAGCGGCATTTGCCTGTGCTC 1827225 Query 7035 CGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTG 7094 | || || || || || ||||| | | | | | || | || ||| ||| || || | Sbjct 1827224 CTGAGTGCGGCTGTACATTTGCCCATTCGGCATTGAATATTTTTTTCAAACGTTCGATAG 1827165 Query 7095 CCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATC 7154 | || | || ||||||| | | | || || || ||||| ||||| || ||||||| Sbjct 1827164 CAAGTGTTTCACTTTCATCAACAACTTCACATCCCCCGTAATAACGTTTCCCGGGATATC 1827105 Query 7155 CCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACAT 7214 |||| ||||| || || || |||| | |||| |||| |||||| | ||| ||| Sbjct 1827104 CCTCGGCATATTTATTAGTCAAAACACTACCCATAGCTTCCATAACCTGGTCGCTGACAA 1827045 Query 7215 AGTTTTCGGACGCAAT 7230 ||||||| || ||||| Sbjct 1827044 AGTTTTCAGAAGCAAT 1827029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555191092944320