Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq714 123 2e-23 >seq714 Length=734366 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| |||||||| | || || |||||||||||||||| ||||||||| || ||||| Sbjct 47755 AATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGCAATTTG 47814 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || ||||| |||||||| || |||| || || ||||| | ||||||||| | | Sbjct 47815 AAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTCTACAAG 47874 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 |||||| || || || || || || ||||| || ||||||| ||| Sbjct 47875 GTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTG 47922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 ||| |||| || | ||| || | ||||| ||||| ||||| | ||||||||| |||| Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | | |||||||| || || | | ||| |||| |||||| || | ||| | || ||| Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--A 13133 ||| || || || ||| || ||| | | | | | ||| | | | | ||||| | Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTC-AGTCG-GTTTTTGAACCA 42267 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCA 13169 |||||| ||||| | ||||||||||||||| |||| Sbjct 42268 AATGCTTGAACATGAGACATGCAAAATCACAATGCA 42303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || |||||||| |||| ||| || | ||| || || | |||||| || || || || Sbjct 43940 CCTGGCATAAGTCCTCTTTTCTTCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAA 43999 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || || || ||||| ||||| |||| || || || ||||| || | | | | | | Sbjct 44000 ATACCCTCCACTGCAGCAAATGCTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCA 44059 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||||| |||||| | |||||| | ||| || || ||| |||| || || ||| Sbjct 44060 ATCCACTGAAGGGCCCAATCTGCTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTA 44119 Query 13391 AATAAATA 13398 |||||||| Sbjct 44120 AATAAATA 44127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430852177590384