Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2315 96.9 3e-15 seq783 87.8 2e-12 >seq2315 Length=138946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 ||||||||||| || || | || ||| || | || |||||||| || || || |||| Sbjct 26965 TTTTGAATGTTATAGTCTGA-AAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAAT 26907 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTG-ATAGACG 48656 || | ||||||||| || | | || ||||| |||||| ||||| | | | Sbjct 26906 CAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTT-TGCTTTTACATTCT 26848 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | |||||||| | | ||| ||| | |||||||||||||| || ||||||||||||| Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 48717 AAATCTGCATCGTG 48730 ||||||||||| || Sbjct 26787 AAATCTGCATCCTG 26774 >seq783 Length=580412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || | ||| | ||| ||||| || || |||||||||||||| | Sbjct 390356 ACCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGA 390297 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| ||||||| |||||||| || | | || || | ||| || || || Sbjct 390296 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 390237 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| |||||| |||| | | | || ||||| | || ||| Sbjct 390236 AATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGAC 390177 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || ||||| ||||| |||||||| |||||||||||||| Sbjct 390176 TTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421123917896792