Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq783 132 4e-26 seq2315 127 2e-24 >seq783 Length=580412 Score = 132 bits (146), Expect = 4e-26 Identities = 186/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 94753 CGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAG 94811 || ||| |||||| |||| | | || ||| || | | ||||||||| | || | | Sbjct 390156 CGGTAAGAGTTTTTACAAAAATCTGCATTCCACCACGAAGTCGCAACACAAGATGAAGTG 390097 Query 94812 TAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCC 94869 ||||||| ||||| | ||| || ||| || | ||| | ||| || ||||| || || Sbjct 390096 TAGATTCTTTTTGAATGTTGTAGTCGGACA--GGGTTCGTCCATCTTCAAGCTGCTTGCC 390039 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||||| ||||| || || ||||| ||||| ||||| || || | ||| || || || Sbjct 390038 GGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGAATCTTGGCTTT 389979 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| ||| ||||| | | || || || | ||||||||||| ||||||||||| Sbjct 389978 GACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGATGGTTTTGCCAGTAAGAGT 389919 Query 94990 TTTCACAAAGATCTGCAT 95007 |||||||| |||||||| Sbjct 389918 CTTCACAAAAATCTGCAT 389901 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| ||||| || || ||||| ||||| ||||| || Sbjct 390512 ATCCTCTAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTT 390453 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || || ||| ||| ||||| | ||||| || | ||||| Sbjct 390452 GTCCTGAATCTTGGCTTTAACGTTTTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGAT 390393 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| |||||||| |||||||| || |||||||| Sbjct 390392 GGTTTTACCAGTAAGGGTTTTCACGAAAATCTGCAT 390357 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTC 94868 |||||||| || || | ||| ||||| | | || ||| | ||||| ||||| || | Sbjct 390325 GTAGATTCTTTCTGAATGTTGTAATC--TGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGC 390268 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| ||||| || || ||||| ||||| ||||| ||||| | |||||| || | Sbjct 390267 CAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTGGCTT 390208 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| ||| || || | ||||| || | || || ||||| || ||||||| Sbjct 390207 TGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGAG 390148 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||| ||||| |||||||| Sbjct 390147 TTTTTACAAAAATCTGCAT 390129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | ||| |||||||| || | ||| || || || | ||| | ||| Sbjct 391334 CACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACA--GGGTTCGTCCATCT 391277 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||| || ||||||| | | ||||||||||||||||| || || || || Sbjct 391276 TCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC 391217 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | |||||| || || || ||| ||||| | || || || | ||||||||| Sbjct 391216 TGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTT 391157 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | ||| || || || |||||||| Sbjct 391156 TTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || ||||||||||||| || || ||||||||||| || |||||| Sbjct 387212 TCTTCCAATTGTTTGCCAGCAAAGATTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTG 387153 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| ||| | | || || | || || || | ||||| Sbjct 387152 TCTTGAATCTTAGCCTTCACGTTCTCAATGGTATCTGAAGCTTCAACTTCTAGGGTGATA 387093 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| || || || || ||||| || |||||||| || Sbjct 387092 GTTTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCCT 387055 >seq2315 Length=138946 Score = 127 bits (140), Expect = 2e-24 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||| | |||||| || | | ||||| | ||| ||||||||||| || | || | Sbjct 26965 TTTTGAATGTTATAGTC--TGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | ||||| |||||||| |||||||| || |||||||| | ||||||||| || || Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | | || |||| | || || |||| || |||||||| ||||||||||||||||||| Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 94998 AGATCTGCATGCT 95010 | |||||||| || Sbjct 26787 AAATCTGCATCCT 26775 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||||||| |||| ||||||| ||||| ||||| || || |||||||| Sbjct 29116 ATCTTCCAACTGTTTTCCTGCAAAAATTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTT 29057 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| || | | || |||| | || || || | ||||| Sbjct 29056 GTCTTGAATCTTTGCCTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 28997 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||||| || || || |||||||| |||||||||| Sbjct 28996 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCATGC 28959 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || |||| ||||||| ||||||||||| || || |||||||| Sbjct 27675 ATCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTT 27616 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| || | | || |||| | || || || | ||||| Sbjct 27615 GTCTTGAATCTTTGCCTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 27556 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || || || |||||||| |||||||| Sbjct 27555 GGTTTTTCCTGTGAGGGTCTTCACAAATATCTGCAT 27520 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || |||| ||||||| ||||||||||| || || |||||||| Sbjct 28177 ATCTTCCAACTGTTTGCCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTT 28118 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||||||| || | | || |||| | || || || | ||||| Sbjct 28117 GTCTTGAATTTTTGCCTTTACATTTTCAATGGTATCAGATGGTTCTACCTCCAGTGTGAT 28058 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || || |||||||| |||||||| Sbjct 28057 GGTTTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 28022 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||||| | ||| ||||| || ||| | |||||||||||| || || ||||||| Sbjct 27318 TTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATA 27259 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | |||||||||||| |||||||||||||| ||||| | || ||||| || || | Sbjct 27258 AGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTTCA 27199 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| | || || || | ||||| ||||||||||| | ||| || || ||| Sbjct 27198 ATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGAAG 27139 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 27138 ATTTGCAT 27131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||| |||| |||||| || || || | || ||||| | Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATC--TG 33162 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || |||||| |||||||| || |||| || | ||| ||||| ||||||| Sbjct 33161 AAAGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAG 33102 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || || || | ||| ||||| || || | | || || | | || | Sbjct 33101 GGATTCCCTCCTTATCTTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCA 33042 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | || || || ||||| || | || ||||||||||||||||||| Sbjct 33041 CTTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATGC 32991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448152274557120