Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq95 111 7e-20 >seq95 Length=1800565 Score = 111 bits (122), Expect = 7e-20 Identities = 234/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 9388 TTCCACGAAGTCGCTGAAGGCTTTCAGCAGGGGTGCGCGTCTCGCCCGGCGA-TCGACCC 9446 |||||| | || || |||||||| | |||| |||| || |||| |||| ||||| | Sbjct 1293972 TTCCACATAATCACTAAAGGCTTTTAATAGGG-TGCGGGTTTCGCTAGGCGCGTCGACAC 1293914 Query 9447 CTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCGGAGAGCTTTC-TCCCGCCCTTGCCC 9505 |||| ||||| ||||| || || ||||||||||| || | ||||| | || || || Sbjct 1293913 CTTCTTGGCAACCGATAAAATCACGGAAGTAGTCAGA-AACTTTCTTGCCATTTTTACCA 1293855 Query 9506 TTGATGAACGAGATGTACTGCTTCGACTGCTTGTTGTTGCGCCACTCGGAGAGGTTGATT 9565 || |||||||| || ||||| || ||||| || || ||||| || || ||||| || Sbjct 1293854 CGAATAAACGAGATATATTGCTTAGATTGCTTATTATTACGCCATTCTGAAAGGTTAATC 1293795 Query 9566 CGCGCCGCCAGGTGTAACTGGCCGAGGTCGAGGTGGCTCGACGGGGTGACGTCCAGTGAC 9625 || || || | || | |||| | || ||||| | | || || || | Sbjct 1293794 CGTGCTGCTAAATGGAGCTGGGATAAATCAAGGTGTTTAGCTTCAGTAACTTCTAAACTA 1293735 Query 9626 TCGTTCACCGCCGCCCCTTCGCTGTGGTGCAGCAGGGCGATCGCCAGGTAGTCGGTCATG 9685 || | || || |||| | | ||||| || | || ||| | | ||| |||||||| Sbjct 1293734 TCAGTAACAGCAATACCTTTGGTATGGTGGAGTAAGGTGATAGTTAAGTAATCGGTCATT 1293675 Query 9686 CCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAG 9729 || || |||||||| |||| || || || || || | ||||| Sbjct 1293674 CCTTGTTGGTAGTGAGCGATAAGCACATAACCACCCATTGAGAG 1293631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208436201445472