Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq172 140 5e-29 seq11697 131 3e-26 seq113 118 2e-22 seq68 118 2e-22 seq480 113 7e-21 seq2673 111 2e-20 seq92 102 1e-17 seq258 80.6 4e-11 >seq172 Length=2005230 Score = 140 bits (154), Expect = 5e-29 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || || ||||| |||||||| |||||| Sbjct 131828 CTCCGGGACAATATCCAGGGTATCACCAAGCCCGCAATTCGTCGCCTGGCTCGCCGTGGT 131887 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| |||| || | |||| ||||||| || | ||| ||||| ||||| Sbjct 131888 GGAGTTAAACGTATCTCCGGTCTCATCTACGAAGAGAGACGCGGTGTGCTGAAGGTCTTC 131947 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| || ||| || |||||||| || | || || || Sbjct 131948 CTCGAGAACGTGATTCGCGATGCTGTCACCTACACAGAGCACGCCAAGAGGAAAACCGTA 132007 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | || || |||| | |||||||| ||| Sbjct 132008 ACTGCCATGGACGTAGTTTACGCCCTTAAGAGGCAGGGACGTACCCTGTATGGTTTCGGA 132067 >seq11697 Length=8188 Score = 131 bits (144), Expect = 3e-26 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||| | || || ||||| |||||||| |||||| Sbjct 1066 CTCCGGGACAATATCCAGGGTATCACCAAGTCCGCAATTCGTCGCCTGGCTCGCCGTGGT 1007 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| |||| || | |||| ||||||| || | ||| ||||| ||| | Sbjct 1006 GGAGTTAAACGTATCTCCGGTCTCATCTACGAAGAGACACGCGGTGTGCTGAAGGTCTCC 947 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| || ||| || |||||||| || | || || || Sbjct 946 CTCGAGAACGTGATTCGCGATGCTGTCACCTACACAGAGCACGCCAAGAGGAAAACCGTA 887 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | || || |||| | |||||||| ||| Sbjct 886 ACTGCCATGGACGTAGTTTACGCCCTTAAGAGGCAGGGACGTACCCTGTATGGTTTCGGA 827 >seq113 Length=2569563 Score = 118 bits (130), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| || ||||| || ||||||||||| || || ||||| ||||||| |||| | Sbjct 1124104 CTCCGAGACAATATCCAGGGTATCACCAAGCCCGCAATTCGTCGCTTGGCTCGCCGTGAT 1124163 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || || |||| || | |||| ||||||| | | ||| ||||| ||||| Sbjct 1124164 GGAGTTAA-CGCATCTCCGGTCTCATCTACGAAGAGACAAGCGGTGTGCTGAAGGTCTTC 1124222 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | |||||| || ||| || ||||||||||| | || || | Sbjct 1124223 CTAGAGAACGTGATTCTCGATGCTGTCACCTACACAGAGCACGCTAAGAGGAAAACCGGA 1124282 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | || || |||| | |||||||| ||| Sbjct 1124283 ACTGCCATGGACGTAGTTTACGCCCTTAAGAGGCAGGGACGTACCCTGTATGGTTTCGGA 1124342 >seq68 Length=2344888 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || || || || ||||||||||| || || ||||| |||||||| |||||| Sbjct 2239138 CTCCGGGAAAATATTCAGGGTATCACCAAGCCCGCAATTCGTCGCCTGGCTCGCCGTGGT 2239197 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || || || | || | || | ||||||| || | ||| ||||| ||||| Sbjct 2239198 GGAGTTAATCGAATCACCGGTCTCATCCACGAAGAGACACGCGGTGTGCTGAAGGTCTTC 2239257 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| || ||| || ||| |||| || | || || || Sbjct 2239258 CTCGAGAACGTGATTCGCGATGCTGTCACCTACACAGAGAACGCCAAGAGGAAAACCGTA 2239317 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | || || |||| | |||||||| ||| Sbjct 2239318 ACTGCCATGGACGTAGTTTACGCCCTTAAGAGGCAGGGACGTACCCTGTATGGTTTCGGA 2239377 >seq480 Length=845224 Score = 113 bits (124), Expect = 7e-21 Identities = 168/240 (70%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || || ||||| |||||||| |||||| Sbjct 239423 CTCCGGGACAATATCCAGGGTATCACCAAGCCCGCAATTCGTCGCCTGGCTCGCCGTGGT 239364 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||| || || |||| || | |||| ||||||| || | ||| ||||| ||||| Sbjct 239363 AGAGTTAAACGCATCTCCGGTCTCATCTACGAAGAGACACGCGGTGTGCTGAAGGTCTTC 239304 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | |||||| || ||| || |||||||| || | || || || Sbjct 239303 CTCGAGA---------ACGATGCTGTCACCTACACAGAGCACGCCAAGAGGAAAACCGTA 239253 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || | || | || || |||| | |||||||| ||| Sbjct 239252 ACTGCCATGGACGTAGTTTACGCCCTTAAGAGGCAGGGACGTACCCTGTATGGTTTCGGA 239193 >seq2673 Length=105946 Score = 111 bits (122), Expect = 2e-20 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || |||||||||||||| || ||||| | |||||| | |||| Sbjct 37256 CTCCGGGACAATATCCAGGGTATCACCAAGCCAGCCATTCGTCGCCCGGCTCGCCATGGT 37197 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||| | || || ||| || | |||| ||||||| || | |||| ||||| ||||| Sbjct 37196 GGATTTAAACGCATCTTCGGTCTCATCTACGAAGAGACACGCGGTGTTCTGAAGGTCTTC 37137 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 ||||||| || || | ||||||||| ||| || ||||| Sbjct 37136 CTCAAGAATGTGATTCGCGATGCTTTCACCTACACAGAGCA 37096 >seq92 Length=1557997 Score = 102 bits (112), Expect = 1e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || | ||| || ||||||||||| || || | | | |||||||| | |||| Sbjct 1127524 CTCCGGGACAATACCCAGGGTATCACCAAGCCTGCCATTCATTGCCTGGCTCGCCTTGGT 1127583 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || || |||| || | |||| | ||||| || | ||| ||||| | ||| Sbjct 1127584 GGAGTTAAACGCATCTCCGGTCTCATCTACGTAGAGAGACGCGGTGTGCTGAAGGTATTC 1127643 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| || ||| |||||||| || | || || || Sbjct 1127644 CTCGAGAACGTGATTCGCGATGCTGTCACCTACTTAGAGCACGCCAAGAGGAAAACCGTA 1127703 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 || |||||||| | || || || | || |||| | |||| | |||||||| Sbjct 1127704 ACTGCCATGGATGTAGTTTACGCCCTTAAGAGTCAGGAACGTACCCTGTATGGTTT 1127759 >seq258 Length=1948968 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || ||||| |||||||| | | Sbjct 649136 CTCCGGGACAATATCCAGGGTATCACCAAGCC----ATTCGTCGCCTGGCTCGCC----T 649085 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || | |||| || | || ||||||| | ||| ||||| ||||| Sbjct 649084 GGAGTTAATTGCATCTCCGGTCCCATATACGAAGAGACTGACTGTGTGCTGAAGGTCTTC 649025 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || || | ||||||| || ||| || |||||||| || | || || || Sbjct 649024 CTCGAGAATGTGATTCGTGATGCTGTCACCTACACAGAGCACGCCAAGAGGAAAACCGTA 648965 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || || || | || | |||| | |||| ||| ||| Sbjct 648964 ACTGCTATGGATGTGGTTTACGCCTTTAAGAGGCAGCGACGTACCCTGTATGATTTCGGA 648905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052532500856