Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq39 141 2e-29 seq340 129 1e-25 seq1206 111 3e-20 seq122 107 4e-19 seq30 102 2e-17 seq203 96.9 7e-16 seq7 95.1 2e-15 seq123 93.3 8e-15 seq1423 86.0 1e-12 >seq39 Length=3240425 Score = 141 bits (156), Expect = 2e-29 Identities = 276/403 (68%), Gaps = 5/403 (1%) Strand=Plus/Minus Query 5206 TAACATCAGCAGGTTTCATTTTGATGGTACTGTG-TATGGTGCTGTTGTAAGTATTCACC 5264 |||| ||| |||| |||||||| || ||| | || |||| | | || || |||| || Sbjct 2061259 TAACTTCAACAGGCTTCATTTTAATAGTATTATGATATG-TATTATTATAGCTATTAACT 2061201 Query 5265 AAGTCATCAAGTGTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT 5324 || || | | | |||| |||| || || | || | | | |||| | ||||||| Sbjct 2061200 AATTCTTGTAATATATCAACCCATTTATAATTACCTTGTATAGAGAACTGTTTCCACATT 2061141 Query 5325 TTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTT 5384 || || || || || || || |||||| | || ||||| | ||| | ||||| Sbjct 2061140 TTTTCTTTTAGAGTCCTGTTAAACCGTTCAACAACAGAAGCTTTAACGTTGGTATATGTT 2061081 Query 5385 GAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCT 5444 ||||| || | || | | | |||||| || ||||| || || ||||||||||||||| Sbjct 2061080 GAATAGTGAGTAATATCATATTTCTTCATTAGCTCTTTAAAGTCCTTGTTGTAAAACTCT 2061021 Query 5445 TTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGCTGAAGTACAGACTTCATA 5504 ||||| | |||| || ||||| |||| |||| ||| | || || | || | Sbjct 2061020 TTACCTTTATCAGTCTGTAGATTAAAAGGGTGACGA--TTGGT-AAATATATGTTTGAAC 2060964 Query 5505 GCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAA 5564 | |||| |||| | | ||| ||||| || | ||| || ||||| |||||||||||| Sbjct 2060963 ACGTTTGTAACATGTTCGCCAGTTTTATTTTTTAATGGCACAGCCCATGCATATTTTGAA 2060904 Query 5565 AATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGA 5607 || | |||||||| || | || |||||| | || ||||||| Sbjct 2060903 AACACGTCTATGATCGTTATCATGTACTTGAAGCCCTTATTGA 2060861 >seq340 Length=1364867 Score = 129 bits (142), Expect = 1e-25 Identities = 250/365 (68%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 4340 TAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTA-CACAAA 4398 |||| || || || ||||| ||| | | ||||| | | | ||||| ||| || ||| Sbjct 605786 TAGGATATATACTCGAAGTTGATATTGAATATCCAAAAGAGCTTCATGA-CTATCATAAA 605844 Query 4399 GATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCACG 4458 ||| || ||| |||||| | | ||||| |||||| ||| | |||| | Sbjct 605845 GATTATCCGTTAGCACCAGAAAAACTAGTACCCCCTGGTTCCAATGATTCAAAATTACTT 605904 Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518 |||| |||| ||||| | || ||||| | ||||| ||| | |||| || |||| Sbjct 605905 GCAACCTTGTATAATAAAGAAAAATATGTATTAAACTATCAAACCCTAAAACTATATTTA 605964 Query 4519 GATTTAGGTTT---AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGAC 4575 | |||| || |||| ||| || |||| ||| | ||||| |||||||| Sbjct 605965 CAGCTAGGATTGCGAGTTACTAA--AAGTACATAGAGTTATAGAATTTAAGCAATCACCA 606022 Query 4576 TGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTC 4635 ||| | ||| ||||||||||| || || | | |||| | ||||| ||||| ||| Sbjct 606023 TGGTTAAAAATATATATCGATATTAACACTGAACTTCGAACCCAAGCTACTAATGATTTC 606082 Query 4636 GaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTA 4695 |||||| |||| |||||||||||||||||| || ||||| ||||| ||||| || || Sbjct 606083 GAAAAAGACTTCTATAAATTAATGAATAATAGTGTATTTGGCAAGACTATGGAAAACATA 606142 Query 4696 CGAAA 4700 || || Sbjct 606143 CGTAA 606147 >seq1206 Length=549353 Score = 111 bits (122), Expect = 3e-20 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 7944 ATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCGG 8003 |||| || ||||| | || |||| |||||| | ||||| |||||||| || ||||||| Sbjct 370588 ATATGATAAACAAATTGCCGTTTGAGCTTCACTTGCCAGGCTATCAGTATTGTGGTCCGG 370647 Query 8004 GTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTG 8063 | || |||| ||||||||||| ||||||| |||| || |||||| | || || | Sbjct 370648 GAACCCGTTTAGAAGAGAGATTAGCTAGAGGTGACCCAGGAATCAATCCTCTTGATGCAG 370707 Query 8064 CGTGTAAGGAACACGATATAGCTTAC 8089 | ||||| ||||||||||| || ||| Sbjct 370708 CTTGTAAAGAACACGATATTGCATAC 370733 >seq122 Length=2383844 Score = 107 bits (118), Expect = 4e-19 Identities = 203/298 (68%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 5310 AACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTG 5369 |||| | |||||||||| ||| || || | || || || ||| | || || || Sbjct 1688796 AACTGTTTCCACATTTTCTCCTTTAGGGTCCGGTTAAATCGCTCAACAACTGAAGCCTTA 1688737 Query 5370 AGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCT 5429 | || | |||||||||| || | || | | | |||||| || ||||| || || Sbjct 1688736 ACGTTTGTATATGTTGAATAGTGAGTGATATCATATTTCTTCATGAGCTCTTTAAAATCC 1688677 Query 5430 TTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGCTGA 5489 |||||||| ||||||||||| | |||| || ||||| |||| |||| | | | Sbjct 1688676 TTGTTGTAGAACTCTTTACCTTTATCAGTCTGCAGATTAAAAGGGTGACGA---TTATCA 1688620 Query 5490 AGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCC 5549 | || || | || |||| |||| | ||||| ||||| || | ||| || ||| Sbjct 1688619 AATATGTGTTTGAACGCGTTTGTAACATGTTCACCAGTTTTATTTTTTAATGGCACAGCC 1688560 Query 5550 CAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGA 5607 || ||||||||||| || | |||||||| || | || |||||| | || ||||||| Sbjct 1688559 CATGCATATTTTGAGAACACGTCTATGATCGTTATCATGTACTTGAAGCCCTTATTGA 1688502 >seq30 Length=3321277 Score = 102 bits (112), Expect = 2e-17 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 5206 TAACATCAGCAGGTTTCATTTTGATGGTACTGTG-TATGGTGCTGTTGTAAGTATTCACC 5264 |||| ||| |||| |||||||| || ||| | || |||| | | || || |||| || Sbjct 352803 TAACTTCAACAGGCTTCATTTTAATAGTATTATGATATG-TATTATTATAGCTATTAACT 352745 Query 5265 AAGTCATCAAGTGTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT 5324 || || | | | |||| |||| || || | || | | | |||| | ||||||| Sbjct 352744 AATTCTTGTAATATATCAACCCATTTATAATTACCTTGTATAGAGAACTGTTTCCACATT 352685 Query 5325 TTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTT 5384 ||| ||| || || | || ||||||||| | || || || | ||| | ||||| Sbjct 352684 TTCTCCTTTAGGGTCCGGTTAAAACGTTCAACAACAGACGCCTTAACGTTGGTATATGTT 352625 Query 5385 GAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCT 5444 ||||| || | || ||||| | |||||| || ||||| || ||||| ||||| |||||| Sbjct 352624 GAATAGTGAGTGATATTGTGTTTCTTCATGAGCTCTTTAAAATCTTTATTGTAGAACTCT 352565 Query 5445 TTACC 5449 ||||| Sbjct 352564 TTACC 352560 >seq203 Length=1686041 Score = 96.9 bits (106), Expect = 7e-16 Identities = 267/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 5206 TAACATCAGCAGGTTTCATTTTGATGGTACTGTGTATGGTGCTGTTGTAAGTATTCACCA 5265 |||| ||| |||| ||||||||||| ||||| || || | || || |||| || | Sbjct 1593816 TAACTTCAACAGGCTTCATTTTGATAGTACTATGATACGTATTATTATAGCTATTAACTA 1593757 Query 5266 AGTCATCAAGTGTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATTT 5325 | || | | | |||| |||| || || | || | | | |||| | |||||||| Sbjct 1593756 ATTCTTGTAATATATCAACCCATTTATAATTACCCTGTATAGAGAACTGTTTCCACATTT 1593697 Query 5326 TCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTG 5385 | || || || || || || |||||| | || || || | ||| | |||||| Sbjct 1593696 TTTCTTTTAGAGTCCTGTTAAACCGTTCAACAACAGACGCCTTAACGTTGGTATATGTTG 1593637 Query 5386 AATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTT 5445 |||| || | || | || | |||||| || ||||| || || |||||||||||||||| Sbjct 1593636 AATAGTGAGTGATTTCATGTTTCTTCATGAGCTCTTTAAAATCCTTGTTGTAAAACTCTT 1593577 Query 5446 TACCCTGATCAACATGGAGATT-CTTAGGGATACGACCTTG----CTGAAGTACAGACTT 5500 |||| | ||| || ||||| | | ||||| ||| | || || | | Sbjct 1593576 TACCTTTATCTGTTTGTAGATTACGT--GGATAACGGTTTGATATTTTAAATATATTTTC 1593519 Query 5501 CATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTT 5560 |||| | | |||| | |||| ||||| || | ||| || |||| ||| |||| Sbjct 1593518 AATAGTGTCTTTAACATGTTTACCAGTTTTATTTTTTAATGGCACAACCCATGCAAATTT 1593459 Query 5561 TGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGA 5607 ||| | || || || |||| || ||| ||| | |||||||||| Sbjct 1593458 ACTAAAAACGTCAATAATAGTAATCATATATTTGAAGCCTTTATTGA 1593412 >seq7 Length=5011566 Score = 95.1 bits (104), Expect = 2e-15 Identities = 270/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 5206 TAACATCAGCAGGTTTCATTTTGATGGTACTGTGTATGGTGCTGTTGTAAGTATTCACCA 5265 |||| ||| |||| |||||||| || ||| |||| ||| |||| |||| | || | Sbjct 459228 TAACTTCAACAGGCTTCATTTTAATAGTATTGTGATAAGTGTTGTTATAAG-AGTCTACT 459170 Query 5266 AGTCATCA-AGTGTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT 5324 ||| | | | || |||| || || | || | | | |||| | ||||||| Sbjct 459169 AGTTTTGGCACTAACTCAACCCATTTATAATTCCCTTGTATAGAGAACTGTTTCCACATT 459110 Query 5325 TTCGTCTTAAGTGTTCTATTGAAACGTTC-ACATATGGATGCTTTGAGATTGCTGAATGT 5383 || || || | || || || || || ||| || |||| || | ||| | |||| Sbjct 459109 TTTTCTTTGAGCGCCCTGTTAAATCGCTCGACAACTG-ATGCCTTAACGTTGGTATATGT 459051 Query 5384 TGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTC 5443 |||||| ||||| || | | || |||| || ||||| || || || ||||||||||| Sbjct 459050 TGAATAGAGATTAATATATTTCT---TCATGAGCTCTTTAAAGTCCTTATTGTAAAACTC 458994 Query 5444 TTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGCTGAAGTACAGACTTCAT 5503 |||| | | ||||| | |||||| |||| |||| ||| || || || | Sbjct 458993 TTTATCATTATCAATCT-GAGATTAAAAGGGTGACGA--TTG-ACAAATATGTGTTTGAA 458938 Query 5504 AGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGA 5563 || |||| ||| | ||||| ||||| |||| || || ||||| ||||||||||| Sbjct 458937 CGCGTTTGTAACACGTTCACCAGTTTTATTTTTAA-TGCCACAGCCCATGCATATTTTGA 458879 Query 5564 AAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGA 5607 || | |||||||| || | || || ||| | || ||||||| Sbjct 458878 GAACACGTCTATGATCGTTATCATGTATTTGAAGCCCTTATTGA 458835 >seq123 Length=2135277 Score = 93.3 bits (102), Expect = 8e-15 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 7944 ATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCGG 8003 || |||| ||||| | || ||||||||||| | ||||| ||| | || || ||||||| Sbjct 571684 ATCTAATAAACAAATTACCGTTTGAACTTCACTTGCCAGGCTATGAATATTGTGGTCCGG 571625 Query 8004 GTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTG 8063 | || |||| |||||||||| |||| ||| ||| || |||||| | |||| | Sbjct 571624 GAACCCGTTTAGAAGAGAGATTAGCAAGAGGCGATCAAGGAATTAATCCTCTTGACGTGG 571565 Query 8064 CGTGTAAGGAACACGATATAGCTTAC 8089 | ||||| ||||| ||||| || ||| Sbjct 571564 CTTGTAAAGAACATGATATCGCATAC 571539 >seq1423 Length=489622 Score = 86.0 bits (94), Expect = 1e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 7940 AACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGT 7999 ||| |||| || || || || || |||| |||||| | ||||| ||| | || ||||| Sbjct 3360 AACGATATTATTAATAAACTTCCCTTTGAGCTTCACTTGCCAGGCTATGAATATTGCGGA 3419 Query 8000 CCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGAC 8059 ||||| || |||| ||||||||||||| |||||| ||| || ||| ||| || Sbjct 3420 CCGGGAACTCGTTTAGAAGAGAGATTAGCTCGGGGTGATCAAGGAATCAATGGTTTAGAT 3479 Query 8060 GCTGCGTGTAAGGAACACGATATAGCTTAC 8089 | || || || || || |||||||| ||| Sbjct 3480 TCGGCATGCAAAGATCATGATATAGCATAC 3509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97945555846768