Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq714 122 1e-22 seq211 98.7 1e-15 seq263 82.4 1e-10 >seq714 Length=734366 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||| | ||||||| || || | ||| ||||| || || | || | Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || ||||| || || || ||||| || || || ||||||||||| | Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33502 | | | |||||| ||||| || | |||| | ||||||| | |||||||| | Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 | |||||||||||||| ||||| ||||| || |||||||| | ||||| Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || || Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||| || ||||||||||| || || || | ||||||||| | |||| ||| Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | | |||||||| || ||||| || |||||||| || || | ||| ||| ||| Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928 Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 |||| |||| || ||| ||||| | ||| Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 ||| |||| |||| |||||||||||| ||||||| ||||| || || || ||||| ||| Sbjct 55181 ATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTAC 55239 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || | ||| || || | ||| || || || ||||| |||||||| ||||||| Sbjct 55240 ATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33109 TTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATC 33168 ||| || | || | |||| || |||||||| || || |||| || || | |||| Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149 Query 33169 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCA 33228 | | || ||||| || || | | || || | ||| |||||||||| ||||||||| Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209 Query 33229 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAA 33288 || | ||| ||||| | ||||| | | || || ||| ||||| || | ||| Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269 Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || || ||||| | |||||| ||||| || |||||||||| Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309 >seq211 Length=1809889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 |||||| ||||| || || ||||| || | || ||||| || || ||||| |||||||| Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 ||||| | ||| || || || ||| |||| || || ||| | |||||||| || || Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891 Query 64085 TGTTACTCCATTATATA 64101 |||||||||| ||||| Sbjct 904890 TGTTACTCCAGCATATA 904874 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||| || || || || | |||| || ||||| || |||||||||||||| || | | Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 | || || || || ||||| ||||| | || ||| ||| | || | ||| | Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600 Query 63486 AT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | ||| ||||| ||||| || || ||| |||||||| || ||| |||| | ||||| Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541 Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT 63574 |||||| ||||| ||||| || || |||| Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511 >seq263 Length=1740189 Score = 82.4 bits (90), Expect = 1e-10 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 80982 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81041 ||||| || || || |||| |||||| |||||||| || || ||||| || || Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435 Query 81042 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATTTTGAATCTTATTCCA 81101 || ||| | ||||| ||||||||| | ||| | ||| |||||||| ||||| Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375 Query 81102 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAGGCTTCC 81161 | ||||| | || || ||| ||| |||||||||||||| || | | ||| ||| | Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315 Query 81162 TTTTCTAAACGATTGGGTGAGGAAACCGAGATA 81194 | | | || || | ||| ||||| ||| || Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622754148662720