Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq714 122 1e-22
seq211 98.7 1e-15
seq263 82.4 1e-10
>seq714
Length=734366
Score = 122 bits (134), Expect = 1e-22
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| || || ||| | ||||||| || || | ||| ||||| || || | || |
Sbjct 43902 CCTCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCT 43961
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || ||||| || || || ||||| || || || ||||||||||| |
Sbjct 43962 TCAGCCAGAAAATTGAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATG 44021
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33502
| | | |||||| ||||| || | |||| | ||||||| | |||||||| |
Sbjct 44022 CTACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTG 44081
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550
| |||||||||||||| ||||| ||||| || |||||||| | |||||
Sbjct 44082 CTTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||| ||| ||| ||||| || | ||||| |||||||| ||||||| ||||| || ||
Sbjct 47749 ATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCATTGC 47808
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| ||||| || ||||||||||| || || || | ||||||||| | |||| |||
Sbjct 47809 AATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCTTTC 47868
Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743
| | |||||||| || ||||| || |||||||| || || | ||| ||| |||
Sbjct 47869 TACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGATAT 47928
Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776
|||| |||| || ||| ||||| | |||
Sbjct 47929 GAAATGCCTTTCATCATTTGTAAGTTTTTCCCA 47961
Score = 93.3 bits (102), Expect = 5e-14
Identities = 89/113 (79%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843
||| |||| |||| |||||||||||| ||||||| ||||| || || || ||||| |||
Sbjct 55181 ATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTAC 55239
Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896
|| | ||| || || | ||| || || || ||||| |||||||| |||||||
Sbjct 55240 ATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 33109 TTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATC 33168
||| || | || | |||| || |||||||| || || |||| || || | ||||
Sbjct 42090 TTTGTACAACCAAGTTCAAGAAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATA 42149
Query 33169 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCA 33228
| | || ||||| || || | | || || | ||| |||||||||| |||||||||
Sbjct 42150 AGGTTGCAGTTCATACCAATCATATCTACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCA 42209
Query 33229 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAA 33288
|| | ||| ||||| | ||||| | | || || ||| ||||| || | |||
Sbjct 42210 ATAGTTACAGCATCCTTAATAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAA 42269
Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328
|| || ||||| | |||||| ||||| || ||||||||||
Sbjct 42270 TGCTTGAACATGAGACATGCAAAATCACAATGCAGACCCT 42309
>seq211
Length=1809889
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024
|||||| ||||| || || ||||| || | || ||||| || || ||||| ||||||||
Sbjct 905010 TTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAAGAATAGCATAATC 904951
Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084
||||| | ||| || || || ||| |||| || || ||| | |||||||| || ||
Sbjct 904950 TGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTATCCAATTCAACAGT 904891
Query 64085 TGTTACTCCATTATATA 64101
|||||||||| |||||
Sbjct 904890 TGTTACTCCAGCATATA 904874
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
||||| || || || || | |||| || ||||| || |||||||||||||| || | |
Sbjct 908719 TTGTTGCCACCTTGGTCCACATATCGCGCAGTGTTGTTGTAAACTCTCAACATGGGTACA 908660
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485
| || || || || ||||| ||||| | || ||| ||| | || | ||| |
Sbjct 908659 AGGCCATTAGAAATTCCATTCGTACCAGCAATGTAGGAGCCAGTAGCCCTGATACAGTGA 908600
Query 63486 AT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544
| ||| ||||| ||||| || || ||| |||||||| || ||| |||| | |||||
Sbjct 908599 ACATGA-AGACCAATTCCACCAGCAGATTTTGAGATTAAGGCACATTGTTTCAGTGTGTC 908541
Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT 63574
|||||| ||||| ||||| || || ||||
Sbjct 908540 ATAGATCCCCTCAATGCTGTCCTCTTTCAT 908511
>seq263
Length=1740189
Score = 82.4 bits (90), Expect = 1e-10
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 80982 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81041
||||| || || || |||| |||||| |||||||| || || ||||| || ||
Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435
Query 81042 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATTTTGAATCTTATTCCA 81101
|| ||| | ||||| ||||||||| | ||| | ||| |||||||| |||||
Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375
Query 81102 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAGGCTTCC 81161
| ||||| | || || ||| ||| |||||||||||||| || | | ||| ||| |
Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315
Query 81162 TTTTCTAAACGATTGGGTGAGGAAACCGAGATA 81194
| | | || || | ||| ||||| ||| ||
Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622754148662720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |