Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq1164 102 9e-17 seq1690 100 3e-16 seq1535 89.7 6e-13 seq3099 86.0 7e-12 seq2760 82.4 8e-11 >seq1164 Length=549247 Score = 102 bits (112), Expect = 9e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 7010 TTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAAT-TGCAACTAAACAGTTCTTT 7068 |||||||||||||| || || || || |||||| | | ||| | | ||||| | ||| Sbjct 244313 TTTGCCTGTGAACCACTGTGTGGCTGGACATTTGCGTATTCTGC-ATTGAACAGGTGTTT 244255 Query 7069 AGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCG 7128 |||||||| || | | |||| ||| || | | | || || || ||||| || Sbjct 244254 TAATCGCTCAATGGCAATTGTTTCGACCTCGTCCACAACTTCGCACCCACCATAATAGCG 244195 Query 7129 TTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAAC 7188 |||||| ||||| || || |||||||| || || |||| |||||| |||||||| || Sbjct 244194 TTTGCCAGGATAGCCTTCTGCATACTTATTTGTTAAAACAGAACCCATTGCTTTCATGAC 244135 Query 7189 ATCATCGGACACATAGTTTTCGGATGCAATCAA 7221 | |||| ||| | ||||| || |||||||| Sbjct 244134 GTTATCGCTTACAAAATTTTCTGAAGCAATCAA 244102 >seq1690 Length=1574822 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGG 7032 ||| || || | ||||| ||| ||||| || |||||| | || |||| || | Sbjct 1043238 ATCCCCGGGGGTAAGCAAGGCAAAATAAACGGCAAAGTTTGCGTTTGCACCGCTGTGCGT 1043297 Query 7033 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7092 ||| ||||| || || || | ||||| |||||||| || || ||||| || | || Sbjct 1043298 TTGCACGTTGGCAAATTTCGCCCCAAACAACTCTTTAGCGCGTTCTATTGCAAGTGTTTC 1043357 Query 7093 GATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATA 7152 ||| ||| | | | || || |||||||| | ||| || ||||| ||||| ||||| Sbjct 1043358 TGCCTCGTCGACAAATTCGCACCCTCCGTAATATCTTTTCCCCGGATAGCCCTCTGCATA 1043417 Query 7153 CTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGA 7212 ||||||||| |||| || ||| ||| ||| ||| || | ||| ||||||| Sbjct 1043418 CTTGTTGGTCAAAAACGAGCCTACCGCCGCCATCACAGCAGGTGTGACAAGGTTTTCGCT 1043477 Query 7213 TGCAATCA 7220 |||||||| Sbjct 1043478 TGCAATCA 1043485 >seq1535 Length=1988416 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 6970 TGAATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATG 7029 || |||||| ||| ||| | || | ||||||| |||||||||| || || || Sbjct 1827277 TGTATCGCCCGGATTCATTATAGCCAGAAAAACAGCGGCATTTGCCTGTGCTCCTGAGTG 1827218 Query 7030 GGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTT 7089 || || || ||||| | | | | | || | || ||| ||| || || || || | Sbjct 1827217 CGGCTGTACATTTGCCCATTCGGCATTGAATATTTTTTTCAAACGTTCGATAGCAAGTGT 1827158 Query 7090 CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGC 7149 || | ||||| | | |||| || |||||||| ||||| || ||||||||||| || Sbjct 1827157 TTCACTTTCATCAACAACTTCACATCCCCCGTAATAACGTTTCCCGGGATATCCCTCGGC 1827098 Query 7150 ATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTC 7209 ||| || || || |||| | ||| |||| |||||| | ||| ||| ||||||| Sbjct 1827097 ATATTTATTAGTCAAAACACTACCCATAGCTTCCATAACCTGGTCGCTGACAAAGTTTTC 1827038 Query 7210 GGATGCAAT 7218 || ||||| Sbjct 1827037 AGAAGCAAT 1827029 >seq3099 Length=1637421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65030 GTGGTCCCTATTGGATTCGAACCAATGACCAACGACTTAGAACGACGTTGCTCTGTCCAG 65089 ||| |||| ||||||||||||||||||||| || ||||||| | |||||||| ||||| Sbjct 1584930 GTGATCCCGATTGGATTCGAACCAATGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAG 1584989 Query 65090 CTGAGCTAAGAGACC 65104 |||||||| | |||| Sbjct 1584990 CTGAGCTACGGGACC 1585004 >seq2760 Length=692328 Score = 82.4 bits (90), Expect = 8e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGG 7032 ||| || ||| ||| || || || | || || ||| || |||| || || || || Sbjct 110197 ATCTCCGGGATTCATCACGGCCAGGAATACGGCAGCGTTAGCTTGTGCTCCTGAGTGCGG 110138 Query 7033 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7092 |||||||||||| | | | || | |||||| ||| ||||| |||| | || Sbjct 110137 TTGAACGTTTGCCCATTCAGCCCCGAAGATTTCTTTTAGACGGTCAATAGCCAATTGTTC 110078 Query 7093 GATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATA 7152 | | | || | | | ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 110077 GCTTTGGTCTACAACTTCGCAACCACCATAATAACGTTTCCCCGGATATCCTTCGGCATA 110018 Query 7153 CTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGA 7212 || ||||| || ||||| || | |||||| | ||| |||| ||||||| || Sbjct 110017 TTTATTGGTTAACCATGAACCCATGGCCTGCATAACCTGATCACTCACAAAGTTTTCTGA 109958 Query 7213 TGCAATCA 7220 ||||||| Sbjct 109957 AGCAATCA 109950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553182115719360