Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_007056.1
Length=45286
Score E
Sequences producing significant alignments: (Bits) Value
seq179 188 2e-43
seq6115 147 6e-31
seq2146 145 2e-30
seq2840 104 7e-18
seq814 100 8e-17
>seq179
Length=2312354
Score = 188 bits (208), Expect = 2e-43
Identities = 257/355 (72%), Gaps = 3/355 (1%)
Strand=Plus/Plus
Query 28737 TTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAA 28796
||||| | |||||||||||||| | |||| || | ||| ||||| || || ||||
Sbjct 379557 TTTTCGTCATCTTTTAATCTTTGAAATTCTTTTATTACATAAAGTTTAAATTCGATAGAA 379616
Query 28797 ATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCG 28856
||||| || || || || ||||| | ||| || ||| | || |||||||||| |||
Sbjct 379617 ATCCATGAGGCAAACTCCAAAGCTATGTATTTGTGTGCAAATGTTCCTCCATATCTACCG 379676
Query 28857 GATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACA 28916
||||||||| ||| || ||||| || || | ||||||||| ||||| || || | |||
Sbjct 379677 GATTTAGAAACTATCCCAATAGCATTCGTGGCTTCAATCCACTTTTT-GGGGTCATTACA 379735
Query 28917 AAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAA 28976
||||| || | || ||||| || ||| | |||||||||||| | |||||||| | |
Sbjct 379736 AAGCTGTTTAAACCTGCTTGTTTCCTAAACCCCTCGAATTCGAGGGGTTTAAAATTCGGA 379795
Query 28977 TTGTTTATATCTTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTT 29036
|||| |||| |||||||| ||| | || || || || |||| | | |||||||
Sbjct 379796 TTGTATATAGTTTCCCAAAATCCCAGAAGTTCAATAGTGTTTCTATTTCTCATCCAGTTT 379855
Query 29037 TGAATTAAAAATCTTGG-GTTTTCAGAGTCCTTATATTTTGCTATATCTGTTAAA 29090
|||| ||| | | | || | | |||| || |||| ||| ||||||||||||
Sbjct 379856 TGAA-TAATAGTGTCGGTATGTGCAGAATCTTTATGGCGTGCAATATCTGTTAAA 379909
>seq6115
Length=286039
Score = 147 bits (162), Expect = 6e-31
Identities = 216/303 (71%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 28739 TTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAAT 28798
||| | |||||| | | ||| | || | |||| || | ||||||||| | |||||
Sbjct 251810 TTCGTCTTCTTTGAGGCGTTGAAATTCGCGGATAAGGTAGAATTTGAACTCGGCAGAAAG 251751
Query 28799 CCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCGGA 28858
||| | || |||||||| |||||||||||||| || |||| || ||||||| ||| |
Sbjct 251750 CCAGGTTGCAAATTCAAAAGCTATATCTTTATGGGCGAAAGTACCGCCATATCTTCCTGT 251691
Query 28859 TTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAA 28918
| | ||| || || || || || |||||||| ||||| ||||||| |||| |||
Sbjct 251690 TCTTGAAACAATGCCAATCGCATTTGTTGTTTCGATCCACCTTTTAGGTGTTAATGAAAA 251631
Query 28919 GCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATT 28978
|||||| || || |||| |||||||| | |||||||||| |||||||| | ||
Sbjct 251630 GCTATTTGAACCTGCTTCATTTTTAATTCCATCGAATTCGATGGAATTAAAATTCGGGTT 251571
Query 28979 GTTTA-TATCTTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTT 29037
|| | ||| |||||| | || | ||| || || ||||| | | | ||||||||
Sbjct 251570 ATTAAATAT-TTCCCATAAACCGATAAATTCGATCGTACTACGGTTCCTCATCCAGTTTT 251512
Query 29038 GAA 29040
|||
Sbjct 251511 GAA 251509
>seq2146
Length=1104199
Score = 145 bits (160), Expect = 2e-30
Identities = 406/616 (66%), Gaps = 24/616 (4%)
Strand=Plus/Plus
Query 28376 TAAAGATTTCATTTGACTTCTAGCTAACTCATTCAACTTGAGTAGTCTTTCTTTTTGAGA 28435
||| |||||||||||| | | || | | ||||| | | |||||||| | ||||||
Sbjct 703612 TAAGGATTTCATTTGAGTAATTGCGACTTTATTCAGTTCAACAAGTCTTTCGTGTTGAGA 703671
Query 28436 ATAACCTTCGC---TAATTAATTCAGCGTTTCTTGATTGAAGATTGTTTAAAACTATTAA 28492
|||||| | ||| ||| ||||| | || | |||| |||| || | |||
Sbjct 703672 TAAACCTTGCCGGATAAGCAAT---GCGTTAATACTTTCCATATTGCTTAATACGACTAA 703728
Query 28493 TTCTTGAAGTGTAGCGTGATCTCTCTGATTGCCTTGTTTTTCAGGATTACTTATTTTCCA 28552
|| || | ||| || | ||| | ||| || ||| || | ||| || ||||
Sbjct 703729 TTGTTCTAATGTCGCATAATCGCGAATATTCCCGCTTTTGTCGGAATTTGTTTCCCTCCA 703788
Query 28553 CTCTTTTGCAGTCATACCAAACAACGCGACATTTAATAAATCGGCTTCTGTAGCATATGT 28612
||||||||| || |||||||| | || || || || ||||||||||| |||||||
Sbjct 703789 CTCTTTTGCGGTAATACCAAAGAGAGCAACGTTCAACAAATCGGCTTCATTAGCATAAAC 703848
Query 28613 ATAACCGATTTGTTGTTTTGTTAACTTTGAATTAATTAAATTTTCTTTTATAGCATCAGT 28672
| || || |||| ||| | ||| || ||||||||||| |||||||| ||
Sbjct 703849 AAAATTTGCCTGCTGTTGTGTAATTTTTTTCGGTATCAAATTTTCTTTGATAGCATCGGT 703908
Query 28673 GAGAATAGTATAATTAGATTTACTTATAAAACGTTTAACATCCCAATTTATACGTTCAG- 28731
| ||| |||||| ||| || |||| | || ||| || || || ||
Sbjct 703909 ATGTATATGATAATTTACTTTGGATAGTGTTCGTTGCAGATTCCA--TTCTAATTTTAGG 703966
Query 28732 -GGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAAT---AATATACAGTTTGAAC 28787
| || ||||| | ||||| | | ||| | ||| | || || |||| |||||
Sbjct 703967 CGATCGTTTTCATCGTCTTTCAGGCGTTGAAATTCTCGTATGAGAAAATAC---TTGAAT 704023
Query 28788 TCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC--CCTC 28845
|| | ||| | ||| | ||||||||||||| ||||||||||| || || | || |
Sbjct 704024 TCGGCAGATAACCAGGTGCCGAATTCAAATGCAATATCTTTATGTGCGAAATACCGCCGC 704083
Query 28846 CATATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAG 28905
| || ||||| ||||| ||| ||| || ||||| || || |||| | |||| ||| |
Sbjct 704084 CGTAACGTCCCGATTTTGAAAATATTCCGATAGCATTTGTCATTTCTACCCATCGTTTGG 704143
Query 28906 GAGTTAGGACAAAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGT 28965
| |||| ||| | || | || || |||| |||||| | |||| | | |||||
Sbjct 704144 GCGTTA----AAAACAATCTG--CCTTCTCCATTTCTAACCGTATGGAATCCCATACGGT 704197
Query 28966 TAAAATTAGAATTGTT 28981
||||||| | ||| ||
Sbjct 704198 TAAAATTGGGATTATT 704213
>seq2840
Length=48513
Score = 104 bits (114), Expect = 7e-18
Identities = 286/430 (67%), Gaps = 25/430 (6%)
Strand=Plus/Plus
Query 28487 TATTAATTCTTGAAGTGTAGCGTGATCTCTCTGATTGCCTTGTTTTTCAGGATTACTTAT 28546
||||||||| | | ||||| | ||| | |||||||| | || || ||| ||
Sbjct 23288 TATTAATTCGTTGATAGTAGCATAATCACGAATATTGCCTTTTAAATCGGGGTTATTTTC 23347
Query 28547 TTTCCACTCTTTTGCAGTCATACCAAACAACGCGACATTTAATAAATCGGCTTCTGTAGC 28606
| |||| ||||| || || ||||||| | || || ||||||| ||| ||||| | ||
Sbjct 23348 TCTCCATTCTTTGGCTGTTGTACCAAATAGTGCAACGTTTAATACATCTGCTTCATTGGC 23407
Query 28607 ATATGTATAACCGA--TTTGTTGTTTTGTTAACTTTGAATTAATTAAATTTTCTTTTATA 28664
||| || | || |||| | | || | | | | ||| | |||| ||||||
Sbjct 23408 ATAA--ATTATTGAAGTTTGCTTTGCCGTGAGTTCAGCAGGAATAAGATTTGTCTTTATA 23465
Query 28665 GCATCAGTGAGAATAGTATAATTAGATTTACTTATAAAA---CGTTTAACATCCCAATTT 28721
||||| || ||||| |||||| ||||| || || || || | |||||
Sbjct 23466 GCATCTGTATGAATATGATAATT-GATTT--TTGCCAATTCTCGCTTTGCCGACCAATCC 23522
Query 28722 ATACGTTCAGGGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGT 28781
| ||| || | ||| || ||||||| || || | ||| | || ||| ||
Sbjct 23523 AATTGTT----GT--TGTTCCTGCTCTTTTAGTCGTTTAAATTCTCTTACAAGATAAAGC 23576
Query 28782 TTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC 28841
| || |||| |||||||| || |||| || || |||||| |||||||||||
Sbjct 23577 TCAAATTCTGCTGAAATCCATGAGGCAAATTTGAAGGCAATATCTGAGTGAGCATAAGTT 23636
Query 28842 CCTCCA---TATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCA---ATC 28895
|||||| || ||||| |||||||| ||||| |||||||| || ||||||| |||
Sbjct 23637 CCTCCACCATAACGTCCCGATTTAGAGGTTATTCCTATAGCATT---TGTTTCAGTAATC 23693
Query 28896 CATTTTTTAG 28905
||||||| ||
Sbjct 23694 CATTTTTGAG 23703
>seq814
Length=598223
Score = 100 bits (110), Expect = 8e-17
Identities = 239/357 (67%), Gaps = 6/357 (2%)
Strand=Plus/Plus
Query 28664 AGCATCAGTGAGAATAGTATAATTAGATTTACTTATAAAACGTTTAACATCCCAATTTAT 28723
|||||| || ||| ||||||||| |||||| | | ||||| |||| ||| ||
Sbjct 288631 AGCATCGGTATGAAGCGTATAATTAACTTTACTAAGTACCCGTTTTACATTCCA--TTCG 288688
Query 28724 ACGTTCA--GGGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGT 28781
|| || || | ||||| ||||| | || || || || ||| | ||| |||
Sbjct 288689 CCGAGCATCGGATTGTTTTCAGCCTCTTTCAGCCTCTGATATTCGGTAATCAAATAGAGT 288748
Query 28782 TTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC 28841
|| ||| | ||| | ||| | | || ||||| || ||||||||||| || |||||
Sbjct 288749 TTAAACACCGGACTGAGCCATGAACCAAACTCAAACGCAATATCTTTATGGGCGTAAGTT 288808
Query 28842 CCTCCATATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTT 28901
|| || | |||||| | || ||| | | ||| ||||| | ||| | ||| ||||||||
Sbjct 288809 CCGCCGTTTCGTCCCGCTTGGGAAATCACACCGATAGCATCAGTAGCTTCTATCCATTTG 288868
Query 28902 TTAGGAGTTAGGACAAAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACA 28961
||| || | ||| | || | ||||| | | || | ||||||||||||
Sbjct 288869 CGAGGTGTCATATTAAAACGGTTTGCCCCGGCCTCGTGCAAAAAGGTGTCGAATTCGACA 288928
Query 28962 CGGTTAAAATTAGAATTGTTTA-TATCTTCCCAAACTCCTAAAAACTCTATGGTACT 29017
| ||||| || ||||| || ||| |||||| |||| | |||||| | |||||
Sbjct 288929 CCTTTAAAGGCAGGATTGTGTAGCATC-TCCCAAGCTCCAAGAAACTCAAGAGTACT 288984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144750972040192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |