Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_007056.1 Length=45286 Score E Sequences producing significant alignments: (Bits) Value seq179 188 2e-43 seq6115 147 6e-31 seq2146 145 2e-30 seq2840 104 7e-18 seq814 100 8e-17 >seq179 Length=2312354 Score = 188 bits (208), Expect = 2e-43 Identities = 257/355 (72%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 28737 TTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAA 28796 ||||| | |||||||||||||| | |||| || | ||| ||||| || || |||| Sbjct 379557 TTTTCGTCATCTTTTAATCTTTGAAATTCTTTTATTACATAAAGTTTAAATTCGATAGAA 379616 Query 28797 ATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCG 28856 ||||| || || || || ||||| | ||| || ||| | || |||||||||| ||| Sbjct 379617 ATCCATGAGGCAAACTCCAAAGCTATGTATTTGTGTGCAAATGTTCCTCCATATCTACCG 379676 Query 28857 GATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACA 28916 ||||||||| ||| || ||||| || || | ||||||||| ||||| || || | ||| Sbjct 379677 GATTTAGAAACTATCCCAATAGCATTCGTGGCTTCAATCCACTTTTT-GGGGTCATTACA 379735 Query 28917 AAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAA 28976 ||||| || | || ||||| || ||| | |||||||||||| | |||||||| | | Sbjct 379736 AAGCTGTTTAAACCTGCTTGTTTCCTAAACCCCTCGAATTCGAGGGGTTTAAAATTCGGA 379795 Query 28977 TTGTTTATATCTTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTT 29036 |||| |||| |||||||| ||| | || || || || |||| | | ||||||| Sbjct 379796 TTGTATATAGTTTCCCAAAATCCCAGAAGTTCAATAGTGTTTCTATTTCTCATCCAGTTT 379855 Query 29037 TGAATTAAAAATCTTGG-GTTTTCAGAGTCCTTATATTTTGCTATATCTGTTAAA 29090 |||| ||| | | | || | | |||| || |||| ||| |||||||||||| Sbjct 379856 TGAA-TAATAGTGTCGGTATGTGCAGAATCTTTATGGCGTGCAATATCTGTTAAA 379909 >seq6115 Length=286039 Score = 147 bits (162), Expect = 6e-31 Identities = 216/303 (71%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 28739 TTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAAT 28798 ||| | |||||| | | ||| | || | |||| || | ||||||||| | ||||| Sbjct 251810 TTCGTCTTCTTTGAGGCGTTGAAATTCGCGGATAAGGTAGAATTTGAACTCGGCAGAAAG 251751 Query 28799 CCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCGGA 28858 ||| | || |||||||| |||||||||||||| || |||| || ||||||| ||| | Sbjct 251750 CCAGGTTGCAAATTCAAAAGCTATATCTTTATGGGCGAAAGTACCGCCATATCTTCCTGT 251691 Query 28859 TTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAA 28918 | | ||| || || || || || |||||||| ||||| ||||||| |||| ||| Sbjct 251690 TCTTGAAACAATGCCAATCGCATTTGTTGTTTCGATCCACCTTTTAGGTGTTAATGAAAA 251631 Query 28919 GCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATT 28978 |||||| || || |||| |||||||| | |||||||||| |||||||| | || Sbjct 251630 GCTATTTGAACCTGCTTCATTTTTAATTCCATCGAATTCGATGGAATTAAAATTCGGGTT 251571 Query 28979 GTTTA-TATCTTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTT 29037 || | ||| |||||| | || | ||| || || ||||| | | | |||||||| Sbjct 251570 ATTAAATAT-TTCCCATAAACCGATAAATTCGATCGTACTACGGTTCCTCATCCAGTTTT 251512 Query 29038 GAA 29040 ||| Sbjct 251511 GAA 251509 >seq2146 Length=1104199 Score = 145 bits (160), Expect = 2e-30 Identities = 406/616 (66%), Gaps = 24/616 (4%) Strand=Plus/Plus Query 28376 TAAAGATTTCATTTGACTTCTAGCTAACTCATTCAACTTGAGTAGTCTTTCTTTTTGAGA 28435 ||| |||||||||||| | | || | | ||||| | | |||||||| | |||||| Sbjct 703612 TAAGGATTTCATTTGAGTAATTGCGACTTTATTCAGTTCAACAAGTCTTTCGTGTTGAGA 703671 Query 28436 ATAACCTTCGC---TAATTAATTCAGCGTTTCTTGATTGAAGATTGTTTAAAACTATTAA 28492 |||||| | ||| ||| ||||| | || | |||| |||| || | ||| Sbjct 703672 TAAACCTTGCCGGATAAGCAAT---GCGTTAATACTTTCCATATTGCTTAATACGACTAA 703728 Query 28493 TTCTTGAAGTGTAGCGTGATCTCTCTGATTGCCTTGTTTTTCAGGATTACTTATTTTCCA 28552 || || | ||| || | ||| | ||| || ||| || | ||| || |||| Sbjct 703729 TTGTTCTAATGTCGCATAATCGCGAATATTCCCGCTTTTGTCGGAATTTGTTTCCCTCCA 703788 Query 28553 CTCTTTTGCAGTCATACCAAACAACGCGACATTTAATAAATCGGCTTCTGTAGCATATGT 28612 ||||||||| || |||||||| | || || || || ||||||||||| ||||||| Sbjct 703789 CTCTTTTGCGGTAATACCAAAGAGAGCAACGTTCAACAAATCGGCTTCATTAGCATAAAC 703848 Query 28613 ATAACCGATTTGTTGTTTTGTTAACTTTGAATTAATTAAATTTTCTTTTATAGCATCAGT 28672 | || || |||| ||| | ||| || ||||||||||| |||||||| || Sbjct 703849 AAAATTTGCCTGCTGTTGTGTAATTTTTTTCGGTATCAAATTTTCTTTGATAGCATCGGT 703908 Query 28673 GAGAATAGTATAATTAGATTTACTTATAAAACGTTTAACATCCCAATTTATACGTTCAG- 28731 | ||| |||||| ||| || |||| | || ||| || || || || Sbjct 703909 ATGTATATGATAATTTACTTTGGATAGTGTTCGTTGCAGATTCCA--TTCTAATTTTAGG 703966 Query 28732 -GGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAAT---AATATACAGTTTGAAC 28787 | || ||||| | ||||| | | ||| | ||| | || || |||| ||||| Sbjct 703967 CGATCGTTTTCATCGTCTTTCAGGCGTTGAAATTCTCGTATGAGAAAATAC---TTGAAT 704023 Query 28788 TCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC--CCTC 28845 || | ||| | ||| | ||||||||||||| ||||||||||| || || | || | Sbjct 704024 TCGGCAGATAACCAGGTGCCGAATTCAAATGCAATATCTTTATGTGCGAAATACCGCCGC 704083 Query 28846 CATATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAG 28905 | || ||||| ||||| ||| ||| || ||||| || || |||| | |||| ||| | Sbjct 704084 CGTAACGTCCCGATTTTGAAAATATTCCGATAGCATTTGTCATTTCTACCCATCGTTTGG 704143 Query 28906 GAGTTAGGACAAAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGT 28965 | |||| ||| | || | || || |||| |||||| | |||| | | ||||| Sbjct 704144 GCGTTA----AAAACAATCTG--CCTTCTCCATTTCTAACCGTATGGAATCCCATACGGT 704197 Query 28966 TAAAATTAGAATTGTT 28981 ||||||| | ||| || Sbjct 704198 TAAAATTGGGATTATT 704213 >seq2840 Length=48513 Score = 104 bits (114), Expect = 7e-18 Identities = 286/430 (67%), Gaps = 25/430 (6%) Strand=Plus/Plus Query 28487 TATTAATTCTTGAAGTGTAGCGTGATCTCTCTGATTGCCTTGTTTTTCAGGATTACTTAT 28546 ||||||||| | | ||||| | ||| | |||||||| | || || ||| || Sbjct 23288 TATTAATTCGTTGATAGTAGCATAATCACGAATATTGCCTTTTAAATCGGGGTTATTTTC 23347 Query 28547 TTTCCACTCTTTTGCAGTCATACCAAACAACGCGACATTTAATAAATCGGCTTCTGTAGC 28606 | |||| ||||| || || ||||||| | || || ||||||| ||| ||||| | || Sbjct 23348 TCTCCATTCTTTGGCTGTTGTACCAAATAGTGCAACGTTTAATACATCTGCTTCATTGGC 23407 Query 28607 ATATGTATAACCGA--TTTGTTGTTTTGTTAACTTTGAATTAATTAAATTTTCTTTTATA 28664 ||| || | || |||| | | || | | | | ||| | |||| |||||| Sbjct 23408 ATAA--ATTATTGAAGTTTGCTTTGCCGTGAGTTCAGCAGGAATAAGATTTGTCTTTATA 23465 Query 28665 GCATCAGTGAGAATAGTATAATTAGATTTACTTATAAAA---CGTTTAACATCCCAATTT 28721 ||||| || ||||| |||||| ||||| || || || || | ||||| Sbjct 23466 GCATCTGTATGAATATGATAATT-GATTT--TTGCCAATTCTCGCTTTGCCGACCAATCC 23522 Query 28722 ATACGTTCAGGGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGT 28781 | ||| || | ||| || ||||||| || || | ||| | || ||| || Sbjct 23523 AATTGTT----GT--TGTTCCTGCTCTTTTAGTCGTTTAAATTCTCTTACAAGATAAAGC 23576 Query 28782 TTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC 28841 | || |||| |||||||| || |||| || || |||||| ||||||||||| Sbjct 23577 TCAAATTCTGCTGAAATCCATGAGGCAAATTTGAAGGCAATATCTGAGTGAGCATAAGTT 23636 Query 28842 CCTCCA---TATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCA---ATC 28895 |||||| || ||||| |||||||| ||||| |||||||| || ||||||| ||| Sbjct 23637 CCTCCACCATAACGTCCCGATTTAGAGGTTATTCCTATAGCATT---TGTTTCAGTAATC 23693 Query 28896 CATTTTTTAG 28905 ||||||| || Sbjct 23694 CATTTTTGAG 23703 >seq814 Length=598223 Score = 100 bits (110), Expect = 8e-17 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 28664 AGCATCAGTGAGAATAGTATAATTAGATTTACTTATAAAACGTTTAACATCCCAATTTAT 28723 |||||| || ||| ||||||||| |||||| | | ||||| |||| ||| || Sbjct 288631 AGCATCGGTATGAAGCGTATAATTAACTTTACTAAGTACCCGTTTTACATTCCA--TTCG 288688 Query 28724 ACGTTCA--GGGTCATTTTCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGT 28781 || || || | ||||| ||||| | || || || || ||| | ||| ||| Sbjct 288689 CCGAGCATCGGATTGTTTTCAGCCTCTTTCAGCCTCTGATATTCGGTAATCAAATAGAGT 288748 Query 28782 TTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC 28841 || ||| | ||| | ||| | | || ||||| || ||||||||||| || ||||| Sbjct 288749 TTAAACACCGGACTGAGCCATGAACCAAACTCAAACGCAATATCTTTATGGGCGTAAGTT 288808 Query 28842 CCTCCATATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTT 28901 || || | |||||| | || ||| | | ||| ||||| | ||| | ||| |||||||| Sbjct 288809 CCGCCGTTTCGTCCCGCTTGGGAAATCACACCGATAGCATCAGTAGCTTCTATCCATTTG 288868 Query 28902 TTAGGAGTTAGGACAAAGCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACA 28961 ||| || | ||| | || | ||||| | | || | |||||||||||| Sbjct 288869 CGAGGTGTCATATTAAAACGGTTTGCCCCGGCCTCGTGCAAAAAGGTGTCGAATTCGACA 288928 Query 28962 CGGTTAAAATTAGAATTGTTTA-TATCTTCCCAAACTCCTAAAAACTCTATGGTACT 29017 | ||||| || ||||| || ||| |||||| |||| | |||||| | ||||| Sbjct 288929 CCTTTAAAGGCAGGATTGTGTAGCATC-TCCCAAGCTCCAAGAAACTCAAGAGTACT 288984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144750972040192