Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq783 136 3e-27 seq242 98.7 9e-16 seq2315 96.9 3e-15 seq1551 91.5 1e-13 >seq783 Length=580412 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | ||||| ||| | || || | ||||| |||||| Sbjct 389900 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTC 389959 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | |||||| |||||| || || |||||||| || || || || Sbjct 389960 AGACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCA 390019 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||| | | ||||||||| || ||||||| ||| | | ||| || || Sbjct 390020 ACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACTACAA 390079 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||||||||||| ||||| | ||||| Sbjct 390080 CATTCAAAAAGAATCTACACTTCATCTTGTGTT 390112 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | || || ||| | ||||| | ||||||||||| Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || |||||| | |||||| || ||| ||||| |||||||| || || || || Sbjct 390188 GGATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 390247 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||| | | |||||||| ||||| || | | ||| | ||||| || Sbjct 390248 ACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAA 390307 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||| |||||||||||| | ||| | ||| | ||| Sbjct 390308 CATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGA 390344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | || || | ||||||||||| Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| |||||| ||||| |||||||| || || || ||| Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390476 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||||| |||| | | |||||||| || || |||| Sbjct 390477 CAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATG 390513 >seq242 Length=1788442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| ||||| || ||| | |||||| |||| || || || Sbjct 1569773 CATAATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGC 1569832 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || ||| || || ||||| |||||||| ||||| || Sbjct 1569833 CTCTGATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGA 1569892 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||||||| |||||| | || ||||| || || |||| ||| || ||||| Sbjct 1569893 TCAACAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTA 1569952 Query 24167 TAACATTCAAAAAG 24180 ||| ||||| |||| Sbjct 1569953 TAATATTCAGAAAG 1569966 >seq2315 Length=138946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || ||| | || || || ||| | Sbjct 26778 ATGCAGATTTTTGTGAAAACTCTTACTGGTAAAACCATAACCCTTGAGGTGGAA-CCATC 26836 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || ||| ||| ||| |||||||| || || ||||| ||||| Sbjct 26837 TGATACCATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGGATTCCTCCTGATCA 26896 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTAT 24167 |||||| |||||| || || || || || ||||||| || | || | ||| | ||| Sbjct 26897 GCAGAGATTGATTTTCGCAGGGAAACAGCTGGAAGATGGACGCACACTTTCAG--ACTAT 26954 Query 24168 AACATTCAAAAAG 24180 ||||||||||||| Sbjct 26955 AACATTCAAAAAG 26967 >seq1551 Length=444118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGA-CAAAGAAGG 24094 ||||||||||| ||||| || | | || ||| || ||| | || ||| ||||| Sbjct 25522 GAAGTCGAGGCTTCAGACACGATTAAAAACGTTAAATCCAAAATT-CAGAGCAAGGAAGG 25464 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGA-- 24152 ||| ||||| || ||||||||| |||| | | ||||||||| || || |||| ||| Sbjct 25463 CATTCCTCCAGACCAACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGAAGAAC 25404 Query 24153 AACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGA 24212 | |||| || || || ||||| |||||||| ||| ||||| | || || | |||||| Sbjct 25403 ATTGTCA--GACTACAATATTCAGAAAGAATCCACACTTCATCTGGTTTTCCGGTTGAGA 25346 Query 24213 GGAGG 24217 || || Sbjct 25345 GGTGG 25341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429806093762760