Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq783 120 3e-22 seq242 95.1 1e-14 seq2315 91.5 1e-13 >seq783 Length=580412 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | |||||| | ||| | || || || || |||||||||||||| Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| || | ||| ||||| || || Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| |||| || | ||| | ||||| | | ||||| Sbjct 390235 ATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGAC 390177 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 390176 TTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| ||| | ||| | || || || |||||||||||||| ||| | Sbjct 390127 CCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAC 390068 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| || | ||| ||||| || || Sbjct 390067 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390008 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || |||| | || | || || | || ||| | Sbjct 390007 ATGCCTTCCTTATC-CTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAAC 389949 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || ||||| || || ||||||||||| Sbjct 389948 TTCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||||||||||||||| || |||| || | ||| ||||| || || || ||||| ||| Sbjct 390511 TCCTCTAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTG 390452 Query 131140 TCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | |||| | | | || | || || | | ||||| || | || | Sbjct 390451 TC-CTGAATCTTGGCTTTAACGTTTTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGAT 390393 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||| || || ||||| |||||||||||||| Sbjct 390392 GGTTTTACCAGTAAGGGTTTTCACGAAAATCTGCAT 390357 >seq242 Length=1788442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 |||||||||||||| || || | || || | ||| || || |||||||| ||||| ||| Sbjct 1569931 TCCTCTAGCTGCTTTCCAGCAAAAATCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTG 1569872 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| || | | || | |||||| | || || | |||| ||||| Sbjct 1569871 TCTTGGATTTTGGCTTTCACATTTTCAATAGTATCAGAGGCTTCAACCTCGAGGGTAATT 1569812 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||| |||| |||||| ||||| |||||||| Sbjct 1569811 GTTTTACCCGTTAAAGTTTTCACGAATATCTGCAT 1569777 >seq2315 Length=138946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 ||||||||||| || || | ||||| || || ||||| || |||||| | || Sbjct 26965 TTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAATC 26906 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTC 131165 || | |||||| || ||||| || || |||||||| ||| ||| ||| || | | ||| Sbjct 26905 AATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTC-TTGAATTTTTGCTTTTACATTCTC 26847 Query 131166 CACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 | ||||| | | || | || | ||| | ||||||||| || |||||||| || || Sbjct 26846 AATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAAA 26787 Query 131226 AATCTGCAT 131234 ||||||||| Sbjct 26786 AATCTGCAT 26778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || ||||| | || ||||| || ||||| |||||||| | Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATC--TG 33162 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| |||| ||||| ||||| ||||| || | || | | ||||||||| |||| Sbjct 33161 AAAGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAG 33102 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 ||||||| || || || ||| | | ||| || | | ||| | ||||| | | || Sbjct 33101 GGATTCCCTCCTTATC-TTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCC 33043 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || | |||| || || || || | || || || || ||||||||| Sbjct 33042 ACTTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATG 32992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||||||||| ||||| || || ||||| || || | ||| || ||||| | | Sbjct 29150 CCTTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAA 29091 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGC 131163 |||| ||||||||||| || ||||||||||||||||| ||| | | || ||| | | Sbjct 29090 TTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTC-TTGAATCTTTGCCTTTACATTT 29032 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||||| | | || | || | || | |||||| || || || || || || Sbjct 29031 TCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACA 28972 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 28971 AATATCTGCATG 28960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471866523233280