Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq783 129 5e-25 seq2315 125 6e-24 >seq783 Length=580412 Score = 129 bits (142), Expect = 5e-25 Identities = 159/215 (74%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || ||| ||||||| | ||||| ||| | || Sbjct 389900 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTC 389959 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| |||| || | ||| || || ||||| ||||| || | Sbjct 389960 AGACACAATCGAAAATGTCA---AAGCCAAGATTCAG-GATAAGGAAGGCATTCCCCCAG 390015 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||| | | || ||||||||||| || | ||||||| || || || ||| | Sbjct 390016 ACCAACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACT 390075 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||| |||||||||||||| || || ||| | ||| Sbjct 390076 ACAACATTCAAAAAGAATCTACACTTCATCTTGTG 390110 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| | ||||| ||| | || Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184 Query 25059 GACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| || |||| |||| ||| || || || || ||||| || || || Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCA-GGATAAGGAGGGCATTCCTCCAGATCA 391243 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| ||||| || |||||| | ||||||| || || || || ||||| Sbjct 391244 GCAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTGTCTGACTACAA 391303 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||| || || || ||||| || || || || || Sbjct 391304 CATTCAGAAGGAATCCACTCTCCACTTGGTGCTTAGACTCAGGGGTGG 391351 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || |||||| ||||||| | ||||| ||| | || Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | ||| ||||| ||||| ||||| || ||||| Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAG-GACAAGGAAGGCATTCCCCCAGACCA 390475 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| ||||| || |||| |||| | ||| || || ||||| Sbjct 390476 ACAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAA 390535 Query 25178 TATTCAAAAAG 25188 |||||| |||| Sbjct 390536 TATTCAGAAAG 390546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || ||| | ||||| | ||||| || | || Sbjct 387058 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTCA 387117 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| |||||||| || ||||| || ||||| Sbjct 387118 GATACCATTGAGAACGTGAAGGCTAAGATTCAA-GACAAAGAGGGAATTCCTCCAGACCA 387176 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| ||||||||||| ||||| | | || || || ||||| Sbjct 387177 ACAGAGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAA 387236 Query 25178 TATTCAAAAAG 25188 ||| || |||| Sbjct 387237 TATACAGAAAG 387247 >seq2315 Length=138946 Score = 125 bits (138), Expect = 6e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || ||| |||||||| | || || || | ||| Sbjct 28022 ATGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCT 28081 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| ||| ||||||||||| || ||||| || || Sbjct 28082 GATACCATTGAAAATGTAAAGGCAAAAATTCAA-GACAAAGAAGGAATCCCACCAGATCA 28140 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| |||||||| || ||||||| |||||| || || ||||| Sbjct 28141 GCAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAA 28200 Query 25178 TATTCAAAAAG 25188 ||| ||||||| Sbjct 28201 TATCCAAAAAG 28211 Score = 122 bits (134), Expect = 8e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || ||| |||||||| | || || || | ||| Sbjct 27520 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 27579 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||||||||| || ||||| || || Sbjct 27580 GATACCATTGAAAATGTAAAGGCAAAGATTCAA-GACAAAGAAGGAATCCCACCAGATCA 27638 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| |||||||| || ||||||| |||||| || || ||||| Sbjct 27639 GCAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAA 27698 Query 25178 TATTCAAAA 25186 ||||||||| Sbjct 27699 TATTCAAAA 27707 Score = 118 bits (130), Expect = 9e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || ||| |||||||| | || || || | ||| Sbjct 28961 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 29020 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||||||||| || ||||| ||||| Sbjct 29021 GATACCATTGAAAATGTAAAGGCAAAGATTCAA-GACAAAGAAGGAATCCCACCAGACCA 29079 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| || ||||| || ||||||| ||||| || || ||||| Sbjct 29080 GCAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGATGGCCGCACACTGTCGGACTACAA 29139 Query 25178 TATTCAAAA 25186 ||||||||| Sbjct 29140 TATTCAAAA 29148 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | || ||| | |||||||| | || Sbjct 32993 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCA 33052 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || ||||||| | ||| || || || || || || || ||| Sbjct 33053 GATACCATTGAG--AATGTAAAAGCAAAGATTCAA-GATAAGGAGGGAATCCCTCCAGAC 33109 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | |||||||| |||||||| | || |||| |||||| | |||||| Sbjct 33110 CAGCAGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTAC 33169 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || ||||| || || Sbjct 33170 AATATTCAGAAAGAGTCTACTCTGCATTTGGTTCT 33204 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || ||| | ||||| | |||||||| | || Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || | || ||||||| | || ||||| ||||| ||||| ||||| Sbjct 27190 TGATACAATTGA--AAATGTAAAAGCAAAGATACA-AGACAAGGAAGGTATTCCTCCTGA 27246 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || | |||| ||||| || || || | || |||| ||||| || ||||| Sbjct 27247 TCAGCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTA 27306 Query 25175 CAATATTCAAAAAG 25188 ||| || ||||||| Sbjct 27307 CAACATACAAAAAG 27320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433197068861480