Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1604 104 3e-17 seq1752 98.7 1e-15 seq1094 95.1 1e-14 seq4222 93.3 5e-14 seq179 93.3 5e-14 seq3213 87.8 2e-12 seq1885 86.0 7e-12 >seq1604 Length=351056 Score = 104 bits (114), Expect = 3e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 162266 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCT 162325 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 162326 GTCTG 162330 | ||| Sbjct 255347 GACTG 255343 >seq1752 Length=186427 Score = 98.7 bits (108), Expect = 1e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTG 162326 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639 >seq1094 Length=2708314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 162266 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCT 162325 ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| Sbjct 606441 CAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTGGGTCACAGGTTCGAATCCT 606500 Query 162326 GTCTG 162330 ||||| Sbjct 606501 GTCTG 606505 >seq4222 Length=21366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 17754 GTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 17813 Query 162328 C 162328 | Sbjct 17814 C 17814 >seq179 Length=2312354 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 162263 GGTC-AGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAA 162321 |||| |||||||||||||||||||||||| ||||||||||| || |||| |||||||||| Sbjct 786961 GGTCTAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCTCAGGTTCGAA 786902 Query 162322 TCCTGTCT 162329 ||||| || Sbjct 786901 TCCTGACT 786894 >seq3213 Length=2170589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||| ||| Sbjct 2104498 GTAGCTCAGCTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCACAAGTTCGAATCTTGT 2104439 Query 162328 C 162328 | Sbjct 2104438 C 2104438 >seq1885 Length=148911 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 162266 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCT 162325 ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||| Sbjct 42836 CAGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCAGGGGTTCGAATCCC 42777 Query 162326 GTCTG 162330 |||| Sbjct 42776 TTCTG 42772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567056214803200