Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq1615 111 4e-20 seq1094 100 7e-17 >seq1615 Length=177996 Score = 111 bits (122), Expect = 4e-20 Identities = 258/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 21905 CCCATTATCGACGCGATCGCACCATGCGCACAGTTCGACGCCGTCACGAGCGCGCTGTCG 21964 |||||| | |||| ||||| || || | ||| ||| ||| || |||| ||| | Sbjct 155881 CCCATTGTGGACGACATCGCCCCGGCCGGCGACTTCAACGACGTTACCGGCGCCCTGGCC 155822 Query 21965 GCCGTGGGGCTAGGAAGCGTTCCGACGTGGCTGCGGCCATTCCCGGTTCTCTCCAACGGA 22024 |||||| || || ||| ||| | ||||| || || |||| ||| || |||||||| Sbjct 155821 AACGTGGGCCTCGGGGACGTGCCGGCCTGGCTCCGCCCCTTCCGGGTGCTGTCCAACGGC 155762 Query 22025 GAGCAATTTCGCGCGGTGTTGGCGCGGCTGGTATGTGAAGCGCCAGCGTTGGCCGTCGTC 22084 ||||| || ||||| | | || || ||| |||| || ||| || || || | Sbjct 155761 GAGCAGTTCCGCGCCGGCCTTGCCCGCCTGATATGCGAGCGGCCGGCCGAGGTGGTGATT 155702 Query 22085 GACGAGTTTTCCTCGGTCGTCGACCGCCAGATTGCCCGCGTCGG-AGCCGGCGCCTTCGC 22143 |||||||| || || || ||||| ||||| |||||| |||| |||| | || ||| Sbjct 155701 GACGAGTTCACCAGCGTGGTGGACCGGCAGATAGCCCGCATCGGCAGCCAG-GCATTCCA 155643 Query 22144 CAAGGCATGGCG---GCGTA--CGAAGGGGC---GCGTTGTGTTGTTATCGTGCCACTAT 22195 ||||||||||| | | | | | ||| ||| || ||| | || |||||| Sbjct 155642 AAAGGCATGGCGCAAGGGAAACCCCGGTGGCAAAGCG--GTATTGCTCACGCCCCACTAC 155585 Query 22196 GACATCCTCGATTGGTTGCAGCCCGATTGGGTTTTCGACACGGGAAGCGGTAATTTTGAA 22255 ||||| || || ||| || | || || ||||| | ||||| || || || || Sbjct 155584 GACATACTGGACTGGCTGGAACCTGACTGGGTGCTGGACACCAAAACAATGAAGTTCGAT 155525 Query 22256 CGGGGGCGTCTTCGGCGACGACC 22278 ||||||||||||| ||||| || Sbjct 155524 AGGGGGCGTCTTCGACGACGGCC 155502 >seq1094 Length=2708314 Score = 100 bits (110), Expect = 7e-17 Identities = 199/295 (67%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 21942 ACGCCGTCACGAGCGCGCTGTCGGCCGTGGGGCTAGGAAGCGTTCCGACGTGGCTGCGGC 22001 |||| || ||| | || |||| | || || || || |||||| | ||||| || | Sbjct 1720085 ACGCAGTAACGGGGGCATTGTCTTCGGTAGGCCTCGGCGATGTTCCGGCATGGCTTCGCC 1720026 Query 22002 CATTCCCGGTTCTCTCCAACGGAGAGCAATTTCGCGCGGTGTTGGCGCGGCTGGTATGTG 22061 | || | || | |||||| || | || | || | | |||| || ||||||||| Sbjct 1720025 CGTTTCATGTGTTGAGCAACGGCGAAAAGTTCAGAGCCGGGCTGGCACGTTTGGTATGTG 1719966 Query 22062 AAGCGCCAGCGTTGGCCGTCGTCGACGAGTTTTCCTCGGTCGTCGACCGCCAGATTGCCC 22121 || || | | || ||||| || ||| | || |||| || ||||||||| Sbjct 1719965 AATGCCCGGATAAAGTTGTTGTCGATGAATTTACAAGCGTTATCGATCGGCAGATTGCCA 1719906 Query 22122 GCGTCGGAGCCGGCGCCTTCGCCAAGGCATGGCGGCGTACGAAGGGGCGCGTTGTGTTGT 22181 || || || | || ||||| ||| |||||||||| ||||||| | || | | Sbjct 1719905 AAGTAGGTGCGGCAGCTTTCGCGAAGACATGGCGGCGCGGAAAGGGGCAAATAGTTCTTT 1719846 Query 22182 TATCGTGCCACTATGACATCCTCGATTGGTTGCAGCCCGATTGGGTTTTCGACAC 22236 |||| || ||||| || || | || |||||||||||||||||||||| |||||| Sbjct 1719845 TATCCTGTCACTACGATATTATTGAATGGTTGCAGCCCGATTGGGTTTACGACAC 1719791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119670358072832