Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2720 105 5e-18 seq877 105 5e-18 >seq2720 Length=46158 Score = 105 bits (116), Expect = 5e-18 Identities = 87/102 (85%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 21829 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTCTTTCATCTAAGGAACC 21888 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTAT 114433 | ||||||| || ||||||||||| ||| || ||| ||||| Sbjct 21889 ATAACTGATTTAATGAGCCATTCGCGGTTTC-ACTTTAGTAT 21929 Score = 105 bits (116), Expect = 5e-18 Identities = 87/102 (85%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 21829 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTCTTTCATCTAAGGAACC 21888 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTAT 115630 | ||||||| || ||||||||||| ||| || ||| ||||| Sbjct 21889 ATAACTGATTTAATGAGCCATTCGCGGTTTC-ACTTTAGTAT 21929 >seq877 Length=573560 Score = 105 bits (116), Expect = 5e-18 Identities = 87/102 (85%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 352774 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTCTTTCATCTAAGGAACC 352833 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTAT 114433 | ||||||| || ||||||||||| ||| || ||| ||||| Sbjct 352834 ATAACTGATTTAATGAGCCATTCGCGGTTTC-ACTTTAGTAT 352874 Score = 105 bits (116), Expect = 5e-18 Identities = 87/102 (85%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 352774 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTCTTTCATCTAAGGAACC 352833 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTAT 115630 | ||||||| || ||||||||||| ||| || ||| ||||| Sbjct 352834 ATAACTGATTTAATGAGCCATTCGCGGTTTC-ACTTTAGTAT 352874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396942426603184