Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009815.1 Length=38124 Score E Sequences producing significant alignments: (Bits) Value seq3213 107 5e-19 seq1191 96.9 8e-16 seq1702 93.3 1e-14 >seq3213 Length=2170589 Score = 107 bits (118), Expect = 5e-19 Identities = 237/350 (68%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 31837 AATATTGGATGCTTGTTGCGGTAGCAGAATGTTCTGGTTTAACCGCACA-AATAAAAACG 31895 ||| || ||||||||||| || || | ||||| ||| | ||| |||| || | Sbjct 780888 AATCTTAGATGCTTGTTGTGGAAGTCGTATGTTTCATTTTGATAA-ACATAATAGGAAAG 780946 Query 31896 TTACATTTATGGACAATAGAGAGCTTGAAACTGAATTGTGCGATGGCAGGAAATTAGTCG 31955 || ||||||||| ||| || | | ||| | | ||||||||||| | |||| | Sbjct 780947 TTCTATTTATGGATAATCGAAAATTAGAAGAAAACCTATGCGATGGCAGAATATTAAAAG 781006 Query 31956 TAAAGCCTGATGTAGTAGCAGATTTTAGAAGTATGCCATTCGATGCCAACACCTTTCACT 32015 |||| ||||| | || || || ||| | |||||| || | | ||| |||| | Sbjct 781007 TAAATCCTGACATTGTGGCCGACTTTCGCCATATGCCTTTTGCTAATGACAGCTTTAATA 781066 Query 32016 TAGTAGTTTTTGATCCGCCGCATTTGCTCAAAGCAGGTGATAAATCCTGGTTGGCCAAAA 32075 | || | || || || || |||||| |||| || || | | ||| || |||| Sbjct 781067 TGGTTATCTTCGACCCACCTCATTTGACAAAAGTTGGCGAAACAAGTTGGATGTGTAAAA 781126 Query 32076 AATATGGGAAGTTAGACCAGAGA-ACTTGGAAAGATGATATaaaaaaaGGATTTAGCGAA 32134 |||| || || ||| | || ||| |||||| || ||||||||||| |||||||| || Sbjct 781127 AATACGGCAAATTA-AACAAAGACACTTGGCAATATGATATAAAACAAGGATTTGATGAG 781185 Query 32135 TGTATGAGAGTTTTGAAACCGAACGGAACATTAATTTTCAAATGGAACGA 32184 |||||||||||| | ||| || ||||| |||| || |||| ||| Sbjct 781186 TGTATGAGAGTTCTCAAAGTTGGTGGTACATTGGTTTTTAAGTGGAGCGA 781235 >seq1191 Length=1801643 Score = 96.9 bits (106), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 11/208 (5%) Strand=Plus/Minus Query 32018 GTAGTTTTTGATCCGCCGCATTTGCTCAAAGCA----GGTGATAAATCCTGGTTGGCCAA 32073 || ||||| || || || ||||| |||||| || || | ||| ||| | || || Sbjct 1470057 GTTGTTTTCGACCCTCCACATTT----AAAGCAACTTGGAGAAACATCATGGCTCGCAAA 1470002 Query 32074 AAAATATGGGAAGTTAGACCAGAGAACTTGGAAAGATGATATaaaaaaaGGATTTAGCGA 32133 ||||||||| ||| | || || |||| || | || | |||| |||||||||| || Sbjct 1470001 AAAATATGGCAAGCTG--CCTGACAACT-GGCAGGAAGTAATAAGAAAAGGATTTGATGA 1469945 Query 32134 ATGTATGAGAGTTTTGAAACCGAACGGAACATTAATTTTCAAATGGAACGAAGACCAAAT 32193 ||||||| | || || || || || ||| | | |||||||||||||||||| | | || Sbjct 1469944 ATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTTTCAAATGGAACGAACATGAGAT 1469885 Query 32194 AAAGCTAAGCGAGATTTTAAAGATAATT 32221 |||| | || ||||| || | || ||| Sbjct 1469884 AAAGGTCAGAGAGATACTAGATATTATT 1469857 >seq1702 Length=707479 Score = 93.3 bits (102), Expect = 1e-14 Identities = 251/370 (68%), Gaps = 23/370 (6%) Strand=Plus/Plus Query 31834 GAAAATATTGGATGCTTGTTGCGGTAGCAGAATGTTCTGGTTTAACCGCACAAATAAAAA 31893 ||||||||| || || ||||| || ||| | |||||||||||||| ||| |||| Sbjct 667628 GAAAATATTAGACGCCTGTTGTGGCAGCCGTATGTTCTGGTTTAAT-----AAACAAAAT 667682 Query 31894 CGTTACAT-TTATGGACA-ATAGAGAGCTTGAA-ACTGAATTGT--GCGATGGCAGGAAA 31948 | | | |||| || ||| | | ||| || ||| | ||||||||||| | Sbjct 667683 CCCAATGTCTTATTTGCAGATAAACGGACAGAAGACCATATTCTCTGCGATGGCAGGCAT 667742 Query 31949 TTAGTCGTAAAGCCTGATGTAGTAGCAGATTTTAGAAGTATGCCATTCGATGCCAACACC 32008 || | ||||||||||| | | | ||||| | | |||||| | || | || || Sbjct 667743 TTGGAAATAAAGCCTGATATCGAAATGGATTTCACCAATATGCCTATTGAAGATAATACA 667802 Query 32009 TTTCACTTAGTAGTTTTTGATCCGCCGCATTTGCTCAAAGCAGGTGATAAA--TCCTGGT 32066 ||| | | || || ||||||||||||||||| | || | || || ||| || ||| Sbjct 667803 TTTGCCCTTGTCGTGTTTGATCCGCCGCATTT-AGCGAAACTGG-GACAAAGCTCGTGGA 667860 Query 32067 TGGCCAAAAAATATGG-GAAGTTAGACCAGAGAACTTGG--AAAGATGATATaaaaaaaG 32123 |||| || ||||| || | | || || || || |||| || | || ||| | | | Sbjct 667861 TGGCAAAGAAATACGGTGTACTT---CCTGATAA-TTGGCCAAGGGTG--ATACATGACG 667914 Query 32124 GATTTAGCGAATGTATGAGAGTTTTGAAACCGAACGGAACATTAATTTTCAAATGGAACG 32183 |||||| || ||||||||||| ||||| | || | |||||| ||||||||||| | Sbjct 667915 GATTTAAAGAGTGTATGAGAGTGCTGAAAAAAGATGGGATATTAATCTTCAAATGGAATG 667974 Query 32184 AAGACCAAAT 32193 || ||||| Sbjct 667975 AAACACAAAT 667984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121839319331744