Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009819.1 Length=40539 Score E Sequences producing significant alignments: (Bits) Value seq21035 91.5 4e-14 seq1604 82.4 2e-11 >seq21035 Length=35860 Score = 91.5 bits (100), Expect = 4e-14 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 8607 CTGACTTCTCAGCGATTGAGGCTAGGGTGATTGCATGGTTTGCTGGAGAGCAGTGGAGGC 8666 |||||| ||| || || || || | ||||| || ||| | || || ||||| ||| ||| Sbjct 30397 CTGACTACTCGGCCATAGAAGCACGTGTGATAGCCTGGCTGGCCGGTGAGCAATGGCGGC 30338 Query 8667 TTGACGTGTTTTCGACGCACGGGAAAATCTACGAGGCGTCTGCCAGTCAGATGTTCGGAA 8726 | ||||| || |||| || || || || || |||||||| ||||| ||||||||||| Sbjct 30337 TGGACGTTTTCGCGACCCATGGAAAGATTTATGAGGCGTCGGCCAGCCAGATGTTCGGCG 30278 Query 8727 TTCCAATTGA 8736 | || ||||| Sbjct 30277 TGCCCATTGA 30268 >seq1604 Length=351056 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 7820 CAGGAAAAAGATACCTCGGGTAAAAACTTAATCAGATACTTTTCCCTGCCTTGCAAACCA 7879 ||| ||||||| || ||||||| | | || | |||||||||||||||||||| || Sbjct 247366 CAGCAAAAAGACGCCCGGGGTAAATCCCTTATTACTTACTTTTCCCTGCCTTGCAAGCCT 247307 Query 7880 AGTAAAACTAACGGTGGGAGAACTAGAAATTTACCAGAACACGCCCCCGAAAAGTGGCAA 7939 | ||||| ||| | || |||||| || || ||| ||| ||||||||| ||| || Sbjct 247306 ACTAAAAAGAACCGAGGCCGAACTATTAACCGGCCTGAAGACGACCCCGAAAAATGGGAA 247247 Query 7940 ATGTTTATTGACTAC 7954 |||||| || ||| Sbjct 247246 TTGTTTAAAGAATAC 247232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129565044169904