Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq242 134 3e-26 seq783 132 1e-25 seq2315 131 4e-25 seq2330 104 6e-17 seq126 104 6e-17 seq875 102 2e-16 seq558 93.3 1e-13 seq1551 91.5 3e-13 seq1094 91.5 3e-13 >seq242 Length=1788442 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || |||||||| || | ||| || ||||| || |||| || ||||| || || | Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| | ||||||| | ||||| ||||| || || |||||||| |||||||| |||| Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTT 1569847 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||| | ||| || ||||| || || || || || || | ||| || |||| Sbjct 1569846 CAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGA 1569787 Query 288464 ATATCTGCATTATG 288477 |||||||||||||| Sbjct 1569786 ATATCTGCATTATG 1569773 >seq783 Length=580412 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | ||||||||| || | || | ||| ||| || || || || ||||| Sbjct 391354 TGGCCACCCCTGAGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCA 391295 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || ||||| ||||| | |||||| || || ||||| |||||||| ||| ||| Sbjct 391294 GACAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGA---TCT 391238 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || |||||||| ||||| |||||||| ||||| || | || | Sbjct 391237 GGAGGAATGCCCTCCTTATCCTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCC 391178 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || || || |||| |||||||||||| |||||||| Sbjct 391177 TCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 >seq2315 Length=138946 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||||||||| ||||| | || ||||| || ||||| || ||||| ||||| || | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | | ||||| ||| ||||||||||||||| || || ||||| || || || |||| Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| | |||||| || || ||||| || || || || || ||||| || | Sbjct 28091 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACAA 28032 Query 288464 ATATCTGCAT 288473 |||||||||| Sbjct 28031 ATATCTGCAT 28022 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| ||||| ||||| | || ||||| || ||||| || ||||| ||||| || || Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| ||| ||||||||||||||| || || || || || || || ||||| Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 27588 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | |||||| || || ||||| || || || || || ||||| || ||| Sbjct 27587 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 27528 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 27527 ATCTGCAT 27520 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| ||||| ||||| | || ||||| || ||||| || ||||||||||| || || Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || ||||||||||||||| || || || || || || || ||||| Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 29029 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | |||||| || || ||||| || || || || || ||||| || ||| Sbjct 29028 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 28969 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 28968 ATCTGCAT 28961 >seq2330 Length=1066040 Score = 104 bits (114), Expect = 6e-17 Identities = 234/350 (67%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 167007 TCATTTGGTCCGCTGAGATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTT 167066 ||||| ||||| | ||| || |||||||| | | ||||| ||| ||||| | Sbjct 490369 TCATTAGGTCCATACAAATTTGTCGGCATCACAGCTATAAAATTTGTTCCGTATTGAATA 490428 Query 167067 CTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTG 167126 | || |||||||| | | ||| || || || ||||| || ||||||| || || Sbjct 490429 TTATAGCTTTCACACATTTTCAGTCCCGCAATCTTTGCTATTGCATATGGTTCATTTGTA 490488 Query 167127 GGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGG 167186 ||| | | || |||| | | | ||||| || || || | | |||||||||| || Sbjct 490489 TATTCTAAAGTGCCAGTCAATAAAGAATCTTCTTTCATTGGTTGTGGAGCTTCTTTAGGA 490548 Query 167187 TAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCAC--TCCGAACATTTTGGACGCAT 167244 || || ||| ||||| | ||| || | |||||| || | |||| | ||| || Sbjct 490549 TAGATACAAGAACTACCTAAAAATACTAATTTTTTAACATTATTTACATAT--GACTGAT 490606 Query 167245 GAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGT 167304 | || ||||| | || ||||||||||| || | ||||| | || | | | | |||| Sbjct 490607 GTATAACATTATTTTGTATCATCAGATTTTCATATATAAATTGCCCTCTGTAAGTATTGT 490666 Query 167305 TCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGT 167354 | || ||| ||||| || || ||||| || ||||| || || || ||| Sbjct 490667 TGGCAACAATTCCTCCAACCTTAGCAGCAGCTAGAAAAACATAATCAGGT 490716 >seq126 Length=3533043 Score = 104 bits (114), Expect = 6e-17 Identities = 348/533 (65%), Gaps = 24/533 (5%) Strand=Plus/Minus Query 72273 CCGGACGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGATAGTTTTAATCAAGCC 72332 || |||||||| || ||||| || || ||| ||| | | |||||| | || || Sbjct 1098841 CCCGACGAAATATATAATTTAGCAGCTCAAAGTCATGTAAAAGTAAGTTTTGA-CACTCC 1098783 Query 72333 -GAGGTGACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTAT 72391 || ||||| || ||||||||| | || || || | |||| || |||||| | Sbjct 1098782 TGAATATACTGCTAATGTAGATGCTTTAGGCACATTACGCATTTTAGAAGCTGTTCGTTT 1098723 Query 72392 ATCGGGTGTCAACT-------CTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAA 72444 || | | |||| |||| || | ||||| || | || || || || ||| Sbjct 1098722 ATTGAACTT-AACTTCAAAAACTCGTATATATCAAGCCTCCACATCTGAATTATACGGAT 1098664 Query 72445 AAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTG 72504 ||| |||||||||||||| | |||| ||| || || ||||| |||| ||||| | || Sbjct 1098663 TAGTACAAGAAATTCCTCAAAAAGAAACTACGCCTTTCTATCCAAGAAGTCCTTATGCTG 1098604 Query 72505 TTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTA 72562 | || || |||| || || ||||| | || |||||| | || | ||||| |||| Sbjct 1098603 TAGCTAAAATGTATGCCTACTGGATTACCGT--TAATTACAGAGAAGCCTATAATATGTT 1098546 Query 72563 TGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGAC 72622 || |||||| ||| ||| || || ||| ||| ||||| | || || || Sbjct 1098545 TGCATGCAATGGAATTCTTTTTAACCATGAGTCTCCTTTAAGAGGTGAAACATTTGTTAC 1098486 Query 72623 TCGTAAAAT--CACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTAT 72680 |||||| | || || | || || || || | ||| | ||||| | | | Sbjct 1098485 TCGTAAGGTTACAAGAGCATTATCCCGGATTGCTTTA--GGTATTCAAAAAGAAGTATTT 1098428 Query 72681 CTCGGTAATATAGATGCCA---AAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737 | |||||| | | ||| | | || ||||| | || || ||||| | ||||| Sbjct 1098427 ATGGGTAATCT---TTCCAGCCAGCGCGACTGGGGGCACGCCAAAGATTATATCAAAGCA 1098371 Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 72790 |||| |||| || ||||| |||||||||||||| ||||| ||||| || || Sbjct 1098370 ATGTATCTGATACTTCAACAGGATACTCCGGATGATTATGTCATTGCTACCGG 1098318 >seq875 Length=1099013 Score = 102 bits (112), Expect = 2e-16 Identities = 274/414 (66%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 72408 CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACG 72467 || |||| || || || | |||||| | ||||| |||||| || || || || | Sbjct 244998 CGTATTTATCAGGCTTCAACATCAGAGCTTTATGGCTTAGTGCAGGAGATCCCACAAAAA 245057 Query 72468 GAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGG 72527 |||| ||||| || ||||| ||||||| || | ||| ||||| |||| ||||||||| Sbjct 245058 GAAACAACTCCATTCTATCCCAGAAGCCCGTATGCTGTGGCAAAAATGTATGCTTATTGG 245117 Query 72528 AT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCA 72585 || |||| ||||||| | ||| | || || ||| ||| | || |||| || | Sbjct 245118 ATAACTGT--AAATTACAGAGAGGCCTACAATATGCATGCTTCTAATGGCATTTTGTTTA 245175 Query 72586 ATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAA--ATCACGAAGGTGGT 72643 |||| || || ||||| | || ||||| || ||| | |||| | | Sbjct 245176 ATCATGAATCACCATTAAGAGGTGAAACTTTTGTGACACGAAAAGTAACACGTGCGGTTT 245235 Query 72644 CGCGAATA---TTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAA 72700 | || ||| || |||| | || ||| | ||| | || ||| || | | || Sbjct 245236 CCCGTATAGCGCTTGGAATG----CAGAATATG-GTATATATGGGAAATCTATCTTCAAA 245290 Query 72701 AAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 72760 | | ||||||||| |||| || ||||| | ||||||| || |||||||||| Sbjct 245291 ACGTGATTGGGGACATGCTAAAGATTATATCCGTGCAATGTATGAAATATTGCAACAAGA 245350 Query 72761 TACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTT 72814 | || ||||| ||||| || |||||||||| ||||| | ||||||| || Sbjct 245351 TCAACCAGATGATTATGTTATAGCAACAGGGATTACAACAACTATTCGTGATTT 245404 Score = 87.8 bits (96), Expect = 4e-12 Identities = 220/334 (66%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 167024 ATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 167083 ||| |||||||| ||||| | |||| |||||||| | ||| |||||||| Sbjct 244028 ATTTGTTGGCATTACCGAAATATAATTTGTCCCATATTGCAAGTTATAACTCTCACACAT 243969 Query 167084 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 167143 | || || || || || || || || || |||| || || ||| | | || Sbjct 243968 TTTAATCCCCGCAATCTTTGCGATTGCATAAGGTTCATTCGTATATTCTAAAGGGGACGT 243909 Query 167144 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 167203 | || | | | ||| || || | | ||||||| ||||| ||||| ||| | ||||| Sbjct 243908 TAACAAACAATTTTCAGGCATTGGTTGTGGAGCTTCCTTTGGATAAATACAAGTACTACC 243849 Query 167204 GAGAAACACGAGTTTTTTCACTCCGAACATTTTG----GACGCATGAATGACATTCGTCT 167259 | ||| | ||||| || || | |||| || |||||||| ||||| ||| Sbjct 243848 CAAAAAAAGAAGTTTCTTTAC----ATTATTTAAATAAGATGCATGAATAACATTATTCT 243793 Query 167260 GAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTC 167319 ||||||||||||| | | ||||||||| || | | | ||| || |||||||| Sbjct 243792 GAATCATCAGATTTTTATAAATAAAATCTCCACGATATCGGAAGTTTGCCATAATACCTC 243733 Query 167320 CTACTTTTGCAGCCGCGAGAAATACGTATTCTGG 167353 | || | ||| ||||| | ||| || ||||| || Sbjct 243732 CAACATGTGCTGCCGCTAAAAAAACATATTCAGG 243699 >seq558 Length=1588989 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65512 TCCGGTAGCATTCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGG 65571 ||| |||||||| || || || | || ||||||||||| || ||||||||||| ||||| Sbjct 93019 TCCTGTAGCATTAGAAGGTGCTTTAAAACTCAAAGAGATATCATATATTCATGCAGAAGG 93078 Query 65572 TTTTCATGGTGGTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGGT 65631 || || || || || |||| ||||| ||| | || || || || || |||| || || Sbjct 93079 TTATCCTGCTGCCGAAATGAAACATGGTCCTATAGCCCTGATAGACGAAAAAATGCCTGT 93138 Query 65632 CATCGT 65637 |||||| Sbjct 93139 CATCGT 93144 >seq1551 Length=444118 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTG 288383 |||||| || || ||||| |||||||| ||| ||||| || || | |||||||| Sbjct 25193 TTGTTTACCAGCAAAGATAAGACGCTGCTGA---TCTGGAGGTATGCCCGCCTTATCCTG 25249 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 |||||| ||||| || ||||| || | || | || ||||| | ||||| || || Sbjct 25250 GATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTT 25309 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| |||||||||||| |||||||| Sbjct 25310 GCCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 >seq1094 Length=2708314 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 72678 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737 ||| | ||||| | ||||||| | |||||||||||||| || || || |||||| Sbjct 1061223 TATTTAGGTAACCTGGATGCCATGCGCGATTGGGGATATGCAAAAGACTATGTAGAATGT 1061282 Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 72790 |||||||| ||||| ||| | ||||| ||||| |||| |||||||| ||||| Sbjct 1061283 ATGTGGTTAATGCTACAATATGATACACCGGAGGACTTCGTGATTGCTACAGG 1061335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179279685728976