Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq126 104 5e-17 seq875 102 2e-16 seq2330 100 6e-16 seq1094 91.5 3e-13 >seq126 Length=3533043 Score = 104 bits (114), Expect = 5e-17 Identities = 348/533 (65%), Gaps = 24/533 (5%) Strand=Plus/Minus Query 68262 CCGGACGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGACAGTTTTAATCAAGCC 68321 || |||||||| || ||||| || || ||| ||| | | |||||| | || || Sbjct 1098841 CCCGACGAAATATATAATTTAGCAGCTCAAAGTCATGTAAAAGTAAGTTTTGA-CACTCC 1098783 Query 68322 -GAGGTGACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTAT 68380 || ||||| || ||||||||| | || || || | |||| || |||||| | Sbjct 1098782 TGAATATACTGCTAATGTAGATGCTTTAGGCACATTACGCATTTTAGAAGCTGTTCGTTT 1098723 Query 68381 ATCGGGTGTCAACT-------CTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAA 68433 || | | |||| |||| || | ||||| || | || || || || ||| Sbjct 1098722 ATTGAACTT-AACTTCAAAAACTCGTATATATCAAGCCTCCACATCTGAATTATACGGAT 1098664 Query 68434 AAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTG 68493 ||| |||||||||||||| | |||| ||| || || ||||| |||| ||||| | || Sbjct 1098663 TAGTACAAGAAATTCCTCAAAAAGAAACTACGCCTTTCTATCCAAGAAGTCCTTATGCTG 1098604 Query 68494 TTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTA 68551 | || || |||| || || ||||| | || |||||| | || | ||||| |||| Sbjct 1098603 TAGCTAAAATGTATGCCTACTGGATTACCGT--TAATTACAGAGAAGCCTATAATATGTT 1098546 Query 68552 TGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGAC 68611 || |||||| ||| ||| || || ||| ||| ||||| | || || || Sbjct 1098545 TGCATGCAATGGAATTCTTTTTAACCATGAGTCTCCTTTAAGAGGTGAAACATTTGTTAC 1098486 Query 68612 TCGTAAAAT--CACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTAT 68669 |||||| | || || | || || || || | ||| | ||||| | | | Sbjct 1098485 TCGTAAGGTTACAAGAGCATTATCCCGGATTGCTTTA--GGTATTCAAAAAGAAGTATTT 1098428 Query 68670 CTCGGTAATATAGATGCCA---AAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726 | |||||| | | ||| | | || ||||| | || || ||||| | ||||| Sbjct 1098427 ATGGGTAATCT---TTCCAGCCAGCGCGACTGGGGGCACGCCAAAGATTATATCAAAGCA 1098371 Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779 |||| |||| || ||||| |||||||||||||| ||||| ||||| || || Sbjct 1098370 ATGTATCTGATACTTCAACAGGATACTCCGGATGATTATGTCATTGCTACCGG 1098318 >seq875 Length=1099013 Score = 102 bits (112), Expect = 2e-16 Identities = 274/414 (66%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 68397 CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACG 68456 || |||| || || || | |||||| | ||||| |||||| || || || || | Sbjct 244998 CGTATTTATCAGGCTTCAACATCAGAGCTTTATGGCTTAGTGCAGGAGATCCCACAAAAA 245057 Query 68457 GAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGG 68516 |||| ||||| || ||||| ||||||| || | ||| ||||| |||| ||||||||| Sbjct 245058 GAAACAACTCCATTCTATCCCAGAAGCCCGTATGCTGTGGCAAAAATGTATGCTTATTGG 245117 Query 68517 AT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCA 68574 || |||| ||||||| | ||| | || || ||| ||| | || |||| || | Sbjct 245118 ATAACTGT--AAATTACAGAGAGGCCTACAATATGCATGCTTCTAATGGCATTTTGTTTA 245175 Query 68575 ATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAA--ATCACGAAGGTGGT 68632 |||| || || ||||| | || ||||| || ||| | |||| | | Sbjct 245176 ATCATGAATCACCATTAAGAGGTGAAACTTTTGTGACACGAAAAGTAACACGTGCGGTTT 245235 Query 68633 CGCGAATA---TTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAA 68689 | || ||| || |||| | || ||| | ||| | || ||| || | | || Sbjct 245236 CCCGTATAGCGCTTGGAATG----CAGAATATG-GTATATATGGGAAATCTATCTTCAAA 245290 Query 68690 AAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 68749 | | ||||||||| |||| || ||||| | ||||||| || |||||||||| Sbjct 245291 ACGTGATTGGGGACATGCTAAAGATTATATCCGTGCAATGTATGAAATATTGCAACAAGA 245350 Query 68750 TACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTT 68803 | || ||||| ||||| || |||||||||| ||||| | ||||||| || Sbjct 245351 TCAACCAGATGATTATGTTATAGCAACAGGGATTACAACAACTATTCGTGATTT 245404 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376 ||||||| ||||| ||||| ||| | ||||| | ||| | ||||| || || | | Sbjct 243879 GAGCTTCCTTTGGATAAATACAAGTACTACCCAAAAAAAGAAGTTTCTTTAC----ATTA 243824 Query 149377 TTTTG----GACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCG 149432 ||| || |||||||| ||||| |||||||||||||||| | | ||||||||| Sbjct 243823 TTTAAATAAGATGCATGAATAACATTATTCTGAATCATCAGATTTTTATAAATAAAATCT 243764 Query 149433 CCCCCGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTAT 149492 || | | | ||| || ||||||||| || | ||| ||||| | ||| || ||| Sbjct 243763 CCACGATATCGGAAGTTTGCCATAATACCTCCAACATGTGCTGCCGCTAAAAAAACATAT 243704 Query 149493 TCTGG 149497 || || Sbjct 243703 TCAGG 243699 >seq2330 Length=1066040 Score = 100 bits (110), Expect = 6e-16 Identities = 223/333 (67%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227 ||| |||||||| || | | ||||| ||| ||||| | | || |||||||| Sbjct 490386 ATTTGTCGGCATCACAGCTATAAAATTTGTTCCGTATTGAATATTATAGCTTTCACACAT 490445 Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287 | | ||| || || || ||||| || ||||||| || || ||| | | || || Sbjct 490446 TTTCAGTCCCGCAATCTTTGCTATTGCATATGGTTCATTTGTATATTCTAAAGTGCCAGT 490505 Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347 || | | | ||||| || || || | | |||||||||| || || || ||| ||||| Sbjct 490506 CAATAAAGAATCTTCTTTCATTGGTTGTGGAGCTTCTTTAGGATAGATACAAGAACTACC 490565 Query 149348 GAGAAACACGAGTTTTTTCAC--TCCGAACATTTTGGACGCATGAATGACATTCGTCTGA 149405 | ||| || | |||||| || | |||| | ||| ||| || ||||| | || Sbjct 490566 TAAAAATACTAATTTTTTAACATTATTTACATAT--GACTGATGTATAACATTATTTTGT 490623 Query 149406 ATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCCT 149465 ||||||||||| || | ||||| | || | | | | ||||| || ||| ||||| Sbjct 490624 ATCATCAGATTTTCATATATAAATTGCCCTCTGTAAGTATTGTTGGCAACAATTCCTCCA 490683 Query 149466 ACTTTTGCAGCCGCGAGAAATACGTATTCTGGT 149498 || || ||||| || ||||| || || || ||| Sbjct 490684 ACCTTAGCAGCAGCTAGAAAAACATAATCAGGT 490716 >seq1094 Length=2708314 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 68667 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726 ||| | ||||| | ||||||| | |||||||||||||| || || || |||||| Sbjct 1061223 TATTTAGGTAACCTGGATGCCATGCGCGATTGGGGATATGCAAAAGACTATGTAGAATGT 1061282 Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779 |||||||| ||||| ||| | ||||| ||||| |||| |||||||| ||||| Sbjct 1061283 ATGTGGTTAATGCTACAATATGATACACCGGAGGACTTCGTGATTGCTACAGG 1061335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102529672925200