Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq126 104 5e-17
seq875 102 2e-16
seq2330 100 6e-16
seq1094 91.5 3e-13
>seq126
Length=3533043
Score = 104 bits (114), Expect = 5e-17
Identities = 348/533 (65%), Gaps = 24/533 (5%)
Strand=Plus/Minus
Query 68262 CCGGACGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGACAGTTTTAATCAAGCC 68321
|| |||||||| || ||||| || || ||| ||| | | |||||| | || ||
Sbjct 1098841 CCCGACGAAATATATAATTTAGCAGCTCAAAGTCATGTAAAAGTAAGTTTTGA-CACTCC 1098783
Query 68322 -GAGGTGACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTAT 68380
|| ||||| || ||||||||| | || || || | |||| || |||||| |
Sbjct 1098782 TGAATATACTGCTAATGTAGATGCTTTAGGCACATTACGCATTTTAGAAGCTGTTCGTTT 1098723
Query 68381 ATCGGGTGTCAACT-------CTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAA 68433
|| | | |||| |||| || | ||||| || | || || || || |||
Sbjct 1098722 ATTGAACTT-AACTTCAAAAACTCGTATATATCAAGCCTCCACATCTGAATTATACGGAT 1098664
Query 68434 AAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTG 68493
||| |||||||||||||| | |||| ||| || || ||||| |||| ||||| | ||
Sbjct 1098663 TAGTACAAGAAATTCCTCAAAAAGAAACTACGCCTTTCTATCCAAGAAGTCCTTATGCTG 1098604
Query 68494 TTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTA 68551
| || || |||| || || ||||| | || |||||| | || | ||||| ||||
Sbjct 1098603 TAGCTAAAATGTATGCCTACTGGATTACCGT--TAATTACAGAGAAGCCTATAATATGTT 1098546
Query 68552 TGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGAC 68611
|| |||||| ||| ||| || || ||| ||| ||||| | || || ||
Sbjct 1098545 TGCATGCAATGGAATTCTTTTTAACCATGAGTCTCCTTTAAGAGGTGAAACATTTGTTAC 1098486
Query 68612 TCGTAAAAT--CACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTAT 68669
|||||| | || || | || || || || | ||| | ||||| | | |
Sbjct 1098485 TCGTAAGGTTACAAGAGCATTATCCCGGATTGCTTTA--GGTATTCAAAAAGAAGTATTT 1098428
Query 68670 CTCGGTAATATAGATGCCA---AAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726
| |||||| | | ||| | | || ||||| | || || ||||| | |||||
Sbjct 1098427 ATGGGTAATCT---TTCCAGCCAGCGCGACTGGGGGCACGCCAAAGATTATATCAAAGCA 1098371
Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779
|||| |||| || ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1098370 ATGTATCTGATACTTCAACAGGATACTCCGGATGATTATGTCATTGCTACCGG 1098318
>seq875
Length=1099013
Score = 102 bits (112), Expect = 2e-16
Identities = 274/414 (66%), Gaps = 14/414 (3%)
Strand=Plus/Plus
Query 68397 CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACG 68456
|| |||| || || || | |||||| | ||||| |||||| || || || || |
Sbjct 244998 CGTATTTATCAGGCTTCAACATCAGAGCTTTATGGCTTAGTGCAGGAGATCCCACAAAAA 245057
Query 68457 GAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGG 68516
|||| ||||| || ||||| ||||||| || | ||| ||||| |||| |||||||||
Sbjct 245058 GAAACAACTCCATTCTATCCCAGAAGCCCGTATGCTGTGGCAAAAATGTATGCTTATTGG 245117
Query 68517 AT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCA 68574
|| |||| ||||||| | ||| | || || ||| ||| | || |||| || |
Sbjct 245118 ATAACTGT--AAATTACAGAGAGGCCTACAATATGCATGCTTCTAATGGCATTTTGTTTA 245175
Query 68575 ATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAA--ATCACGAAGGTGGT 68632
|||| || || ||||| | || ||||| || ||| | |||| | |
Sbjct 245176 ATCATGAATCACCATTAAGAGGTGAAACTTTTGTGACACGAAAAGTAACACGTGCGGTTT 245235
Query 68633 CGCGAATA---TTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAA 68689
| || ||| || |||| | || ||| | ||| | || ||| || | | ||
Sbjct 245236 CCCGTATAGCGCTTGGAATG----CAGAATATG-GTATATATGGGAAATCTATCTTCAAA 245290
Query 68690 AAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 68749
| | ||||||||| |||| || ||||| | ||||||| || ||||||||||
Sbjct 245291 ACGTGATTGGGGACATGCTAAAGATTATATCCGTGCAATGTATGAAATATTGCAACAAGA 245350
Query 68750 TACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTT 68803
| || ||||| ||||| || |||||||||| ||||| | ||||||| ||
Sbjct 245351 TCAACCAGATGATTATGTTATAGCAACAGGGATTACAACAACTATTCGTGATTT 245404
Score = 84.2 bits (92), Expect = 5e-11
Identities = 130/185 (70%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376
||||||| ||||| ||||| ||| | ||||| | ||| | ||||| || || | |
Sbjct 243879 GAGCTTCCTTTGGATAAATACAAGTACTACCCAAAAAAAGAAGTTTCTTTAC----ATTA 243824
Query 149377 TTTTG----GACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCG 149432
||| || |||||||| ||||| |||||||||||||||| | | |||||||||
Sbjct 243823 TTTAAATAAGATGCATGAATAACATTATTCTGAATCATCAGATTTTTATAAATAAAATCT 243764
Query 149433 CCCCCGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTAT 149492
|| | | | ||| || ||||||||| || | ||| ||||| | ||| || |||
Sbjct 243763 CCACGATATCGGAAGTTTGCCATAATACCTCCAACATGTGCTGCCGCTAAAAAAACATAT 243704
Query 149493 TCTGG 149497
|| ||
Sbjct 243703 TCAGG 243699
>seq2330
Length=1066040
Score = 100 bits (110), Expect = 6e-16
Identities = 223/333 (67%), Gaps = 4/333 (1%)
Strand=Plus/Plus
Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227
||| |||||||| || | | ||||| ||| ||||| | | || ||||||||
Sbjct 490386 ATTTGTCGGCATCACAGCTATAAAATTTGTTCCGTATTGAATATTATAGCTTTCACACAT 490445
Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287
| | ||| || || || ||||| || ||||||| || || ||| | | || ||
Sbjct 490446 TTTCAGTCCCGCAATCTTTGCTATTGCATATGGTTCATTTGTATATTCTAAAGTGCCAGT 490505
Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347
|| | | | ||||| || || || | | |||||||||| || || || ||| |||||
Sbjct 490506 CAATAAAGAATCTTCTTTCATTGGTTGTGGAGCTTCTTTAGGATAGATACAAGAACTACC 490565
Query 149348 GAGAAACACGAGTTTTTTCAC--TCCGAACATTTTGGACGCATGAATGACATTCGTCTGA 149405
| ||| || | |||||| || | |||| | ||| ||| || ||||| | ||
Sbjct 490566 TAAAAATACTAATTTTTTAACATTATTTACATAT--GACTGATGTATAACATTATTTTGT 490623
Query 149406 ATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCCT 149465
||||||||||| || | ||||| | || | | | | ||||| || ||| |||||
Sbjct 490624 ATCATCAGATTTTCATATATAAATTGCCCTCTGTAAGTATTGTTGGCAACAATTCCTCCA 490683
Query 149466 ACTTTTGCAGCCGCGAGAAATACGTATTCTGGT 149498
|| || ||||| || ||||| || || || |||
Sbjct 490684 ACCTTAGCAGCAGCTAGAAAAACATAATCAGGT 490716
>seq1094
Length=2708314
Score = 91.5 bits (100), Expect = 3e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 68667 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726
||| | ||||| | ||||||| | |||||||||||||| || || || ||||||
Sbjct 1061223 TATTTAGGTAACCTGGATGCCATGCGCGATTGGGGATATGCAAAAGACTATGTAGAATGT 1061282
Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779
|||||||| ||||| ||| | ||||| ||||| |||| |||||||| |||||
Sbjct 1061283 ATGTGGTTAATGCTACAATATGATACACCGGAGGACTTCGTGATTGCTACAGG 1061335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102529672925200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |