Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq783 138 1e-27 seq2315 120 3e-22 seq779 104 2e-17 seq211 84.2 2e-11 seq1551 82.4 8e-11 >seq783 Length=580412 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| ||||| ||||| | || |||||||| |||||||||||||||| Sbjct 390356 ACCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGA 390297 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || ||||||||||| ||| | || | | ||| ||||| || || Sbjct 390296 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGG 390237 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || || || | |||| ||||| ||| ||| | ||||| || || | Sbjct 390236 AATGCCTTCCTTGTCCTG-AATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGA 390178 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | ||| | || || ||||| | ||||||||| ||||| |||||| Sbjct 390177 CTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCATT 390128 Score = 136 bits (150), Expect = 4e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || |||||||||||||||||||| || | | ||| || | ||||| Sbjct 390110 CACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCATCTTC 390051 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||||||||||| | || | | ||| ||||| || ||||| ||||| || || || Sbjct 390050 AAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTG 389991 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | | || ||||| ||| || | ||| || ||| || ||||||| ||| | ||| | Sbjct 389990 -AATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGATGGTTT 389932 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || | ||| || || ||||| |||||| Sbjct 389931 TGCCAGTAAGAGTCTTCACAAAAATCTGCATT 389900 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||||||||| | || | || ||||| || ||||||||||| || | | ||| || | Sbjct 391340 TCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCC 391281 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||||| || || || ||| | || || |||||||| || |||||||| || || || Sbjct 391280 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTT 391221 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 || || | |||| ||||| ||| || | ||| || || || ||||| | ||| | Sbjct 391220 ATCCTG-AATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGA 391162 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| || |||||||| ||||| Sbjct 391161 TGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || || ||||| |||| | || | ||||||| | || ||||| ||| | | Sbjct 387247 CTTTCTGTATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAGA 387188 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | | ||| ||||| ||||||||||| ||||| ||||| || || ||| || || Sbjct 387187 TTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTCT 387128 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| || || ||||||| || | || || || |||| || || |||| Sbjct 387127 CAATGGTATCTGAAGCTTCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCACGA 387068 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 387067 AAATCTGCAT 387058 >seq2315 Length=138946 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| | | ||||| | || || |||||||| || ||| | | Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || | ||||| || |||||||| ||||| || |||||||| ||| |||||| | Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||||| | |||||||| | || | || || || |||||||| || |||| Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 64434 AAATTTGCATT 64444 | ||||||||| Sbjct 27140 AGATTTGCATT 27130 Score = 113 bits (124), Expect = 5e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||||||||| || |||| | ||||| | ||||| ||||| || || || ||| Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | | |||||| || |||||||| || ||||| ||||| |||||| |||||| || Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | ||||| || | |||| ||| || || || | |||||| || | Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 26787 AAATCTGCAT 26778 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCG--CGTCTTCAAGCTGCTTGCCGGCATA 64311 ||||||| || ||||| || |||| ||| ||| | ||||| | ||| ||||| ||| | Sbjct 28211 CTTTTTGGATATTGTAGTC--CGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAA 28154 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| | |||||||| || || || ||||||||||| ||||| |||||| ||||||| Sbjct 28153 AATTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATT 28094 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | |||||| | || || || | || | ||| ||||| || | || || || Sbjct 28093 TTCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCAC 28034 Query 64432 GAAAATTTGCAT 64443 || || ||||| Sbjct 28033 AAATATCTGCAT 28022 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCG--CGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||| ||||| || |||| ||| ||| | ||||| | ||| ||||| ||| ||| Sbjct 27707 TTTTGAATATTGTAGTC--CGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 27650 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | |||||||| || || || ||||||||||| ||||| || ||| ||||||| | Sbjct 27649 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTT 27590 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | || || || | || | ||| || || || | || || || | Sbjct 27589 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAA 27530 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 27529 ATATCTGCAT 27520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCG--CGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||| ||||| || |||| ||| ||| | ||||| | ||| || || ||| ||| Sbjct 29148 TTTTGAATATTGTAGTC--CGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAA 29091 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | ||||||||||| || || ||||||||||| ||||| || ||| ||||||| | Sbjct 29090 TTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTT 29031 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | || || || | || | ||| || || || | || || || | Sbjct 29030 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAA 28971 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 28970 ATATCTGCAT 28961 >seq779 Length=683570 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | |||||| ||||||| ||||| ||||| || || ||||| |||| Sbjct 346026 ACCACCTCTCAAGCGAAGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTGA 345967 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||||||||||||||||||| | || || || |||||||| || || Sbjct 345966 CAAAGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTCTGGGGG 345907 Query 64336 AATTCCT 64342 ||| ||| Sbjct 345906 AATACCT 345900 >seq211 Length=1809889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| | ||||| || ||||| ||||| || ||||||||||| || | || || ||||| Sbjct 922577 GTGTATGGCTCAAAAGATTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATG 922518 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 || | | ||||||||| || | ||| || | |||||| || || | ||| ||| Sbjct 922517 GGAGCAAGAAGCAAAGAGTTGCGAACACCATGCTGTGCAATACGTTTCTTCAGATCAGCC 922458 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234 || | ||||| || || ||| || ||||||||||| || || Sbjct 922457 CAGTCCCACAGGTCTGTTGGTGTGACATTCCACATGTCATACTG 922414 >seq1551 Length=444118 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || |||||||| ||||| ||||| |||| | || | | || ||| Sbjct 25359 ACCAGATGAAGTGTGGATTCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCA 25418 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||||||||||||| | || | | ||| ||||| |||||||| ||||| || Sbjct 25419 AGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGAGGAATGCCTTCCTT 25471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499489960076480