Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011104.1 Length=39989 Score E Sequences producing significant alignments: (Bits) Value seq2340 82.4 2e-11 >seq2340 Length=108680 Score = 82.4 bits (90), Expect = 2e-11 Identities = 174/259 (67%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 26173 CATTCTCATCGGTGACTTAGCCAAGCTCATACGCCAGAACGGTGTGGATATTGGCCAGAA 26232 |||||| | || || | |||||||| | |||||||| || |||| ||||| || Sbjct 100825 CATTCTGGTAGGCGATCTTGCCAAGCTGCTGAAACAGAACGGAGTTAATATGGGCCAAAA 100766 Query 26233 TAGGCTGTTCGCTTGGCTGCGAGATCACGGCTATCTGATTGGCA---GTGGAGATCGCCG 26289 | | ||||| ||| |||| | |||||| | || || | || || || | Sbjct 100765 TCGCCTGTTTCAGTGGATGCGCCAGAACGGCTGGATAATGAACACACGCGGCGAACGATG 100706 Query 26290 CAACATGCCGACACAACGAGCAATGGACTTAGGCCTGTTCGATATCAAGGAACGCACATT 26349 |||| ||| || ||| | ||||| || | ||||| ||||||||||| | | Sbjct 100705 GAACACGCCCACCCAAAAGGGCATGGATCGCGGGTTCTTCGAACTCAAGGAACGCGCCAT 100646 Query 26350 CCAGAACCCAGATGGTAGCGTGCGAATCACCAAGACGACCAAGGTAACCGGAAAAGGCCA 26409 | ||||| || || | | || || || || || |||||||| ||||| ||||| || Sbjct 100645 CACAAACCCGGACGGGACAATCCGCATGACGAAAACAACCAAGGTCACCGGCAAAGGGCA 100586 Query 26410 GCAGTATTTTATCAACAAG 26428 ||||||||| |||| |||| Sbjct 100585 GCAGTATTTCATCACCAAG 100567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127805562322704