Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011272.1 Length=153894 Score E Sequences producing significant alignments: (Bits) Value seq1659 86.0 6e-12 seq2787 84.2 2e-11 seq1885 84.2 2e-11 >seq1659 Length=254437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 112491 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 112550 || ||||| || ||||| || || || |||| || ||| | || | |||| | | || Sbjct 98743 TGGCTGTG-GGACCGGGACGCGGTTCGGCCGCCGGGTCGGTCGTGGCATACGCCCTCGGG 98685 Query 112551 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGAC 112610 || || |||||||||||||| ||||||||| | |||||||| ||| |||| || ||| Sbjct 98684 ATAACTAATATCGACCCGATCAAATACGACCTGCTTTTCGAGCGTTTCCTCAATCCCGAC 98625 Query 112611 CG--CCCCGACTTCCCCGACATCGACGTCGACTTC 112643 || | || ||| ||||| |||||| |||| ||| Sbjct 98624 CGTATCTCG-CTT-CCCGATATCGACATCGATTTC 98592 >seq2787 Length=1710943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 94886 ATGCGAAGGTAGCTCAGCTGGCAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 94945 ||||||| ||||||||| ||| ||||| | ||||||||||||| | ||||||||| ||| Sbjct 516232 ATGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGA 516173 Query 94946 AACCCGTTCTTCGCTC 94961 | ||||| ||||||| Sbjct 516172 ATCCCGTCTTTCGCTC 516157 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 94887 TGCGAAGGTAGCTCAGCTGGCAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGTA 94946 |||||| ||||||||| ||| ||||| | ||||||||||||| | ||||||||| ||| | Sbjct 253217 TGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGAA 253158 Query 94947 ACCCGTTCTTCGCTC 94961 ||||| ||||||| Sbjct 253157 TCCCGTCTTTCGCTC 253143 >seq1885 Length=148911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 94886 ATGCGAAGGTAGCTCAGCTGGCAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 94945 ||||||| ||||||||| ||| ||||| | ||||||||||||| | ||||||||| ||| Sbjct 88486 ATGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGA 88545 Query 94946 AACCCGTTCTTCGCTC 94961 | ||||| ||||||| Sbjct 88546 ATCCCGTCTTTCGCTC 88561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492180226065280