Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq9946 84.2 2e-11 seq1599 82.4 6e-11 seq75 82.4 6e-11 >seq9946 Length=7381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 108888 CGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAG 108936 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 6519 CGGCGAGGGGTGGCACAACTACCACCACGTGTTCCCCTACGACTACAAG 6471 >seq1599 Length=3738065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 || || ||||| || | |||| |||| |||||||| || ||||| ||| || ||| Sbjct 2339761 CCATCTCGACCTGCACGTCCTGTCTCCTGATAATATCCTTCCAGACTTTTCGGTATATCA 2339702 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 | ||| ||||| | || |||||||||||||| || ||||| || || || ||||||| Sbjct 2339701 TAATGAATCACATAACGTACGTCGGGTTTATCAATACCCATACCAAATGCAATCGTCG 2339644 >seq75 Length=3031367 Score = 82.4 bits (90), Expect = 6e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 |||||| | || |||||||| |||||||||||| ||||| || ||||| |||| Sbjct 1897123 AGTGGGCGAGAGACCACAGGGTGCACCACAAGTACAGCGACACAGATGCAGACCCCCACA 1897182 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 | || | | | || |||| | |||||||||||| ||| | ||| ||| ||| |||| | Sbjct 1897183 ATGCGAGCCGCGGATTCTTCTACTCGCACGTGGGCTGGTTAATGCAGACAAAGCACCCGG 1897242 Query 108584 ACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGT 108641 | ||| | ||||| ||| || | || ||| | | ||| | | ||||||| || || Sbjct 1897243 AGGTGCT-TCGGCGCGGGCGCCAGATCGACGTCAGTGACGTCTTGGCCGATCCAGTCGT 1897300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381657446394048