Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq783 96.9 3e-15
seq2315 89.7 5e-13
seq1551 84.2 2e-11
>seq783
Length=580412
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| |||||||||||||| || || || || || ||||||||||| | |
Sbjct 391318 GATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCA 391259
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| || || ||||| || || || || || ||| |||| | ||| |
Sbjct 391258 AAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC-TGAATTTTGGCTTTCAC 391200
Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| ||| | ||||| | | ||| || || | || | ||||| ||||||| ||| ||
Sbjct 391199 ATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTT 391140
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 391139 GACGAAAATCTGCAT 391125
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
||||| || | ||| | | || || |||||||||||||||||| || || ||
Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|| || || || || |||| | |||| | | ||||||||| || || || ||||| ||
Sbjct 390055 TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTA 389996
Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578
|| ||| | || | ||| | | ||| | ||||| | | ||| || || | || |
Sbjct 389995 TCC-TGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGAT 389937
Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| ||||| ||||| || ||||||||||||||
Sbjct 389936 GGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || || ||||||||||| || | ||| || ||||||||| || || || | |
Sbjct 390322 GATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCA 390263
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| | | ||||||||| || || || ||||| ||||| ||| |||| | ||| |
Sbjct 390262 AAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTC-CTGAATTTTGGCTTTGAC 390204
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | || || | | ||| || || | || | ||||| || || ||||||||
Sbjct 390203 ATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTT 390144
Query 138600 TACAAAAATCTGCAT 138614
|||||||||||||||
Sbjct 390143 TACAAAAATCTGCAT 390129
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/192 (71%), Gaps = 3/192 (2%)
Strand=Plus/Minus
Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483
||||| ||||| |||||||| || ||| | ||||| || || || || | | ||
Sbjct 390547 CCTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAG 390488
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TG 138542
|| | | ||||||||| || || || ||||| ||||| ||| | || | ||||| |
Sbjct 390487 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTT 390429
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
||| | ||||| | | ||| || || | || | ||||||||||| || ||||| ||
Sbjct 390428 TTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCAC 390369
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 390368 GAAAATCTGCAT 390357
>seq2315
Length=138946
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGA 138484
||||||||||| ||||| | | ||| ||| || || || ||||| || | | |
Sbjct 26965 TTTTGAATGTTATAGTC--TGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGT 138543
| | | ||| || || ||||| || || |||||||| ||| |||||| ||||| |
Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTC 26849
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | ||| || | | |||||||| | || | ||||||||||| |||||||| |||
Sbjct 26848 TCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACA 26789
Query 138604 AAAATCTGCAT 138614
|||||||||||
Sbjct 26788 AAAATCTGCAT 26778
>seq1551
Length=444118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
||||||||||| | | |||| |||||||| || || |||||||| || | || || |
Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250
Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585
||||| ||||| | ||| | ||||| | | ||| || || | || | |||||
Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310
Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||| ||| || || |||||||||||
Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496108608282240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |