Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq783 96.9 3e-15 seq2315 89.7 5e-13 seq1551 84.2 2e-11 >seq783 Length=580412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || || || || || ||||||||||| | | Sbjct 391318 GATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCA 391259 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || || || || || ||| |||| | ||| | Sbjct 391258 AAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC-TGAATTTTGGCTTTCAC 391200 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||| || || | || | ||||| ||||||| ||| || Sbjct 391199 ATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTT 391140 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 391139 GACGAAAATCTGCAT 391125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || | ||| | | || || |||||||||||||||||| || || || Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || |||| | |||| | | ||||||||| || || || ||||| || Sbjct 390055 TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTA 389996 Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||| | | ||| | ||||| | | ||| || || | || | Sbjct 389995 TCC-TGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGAT 389937 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| ||||| || |||||||||||||| Sbjct 389936 GGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||||||||| || | ||| || ||||||||| || || || | | Sbjct 390322 GATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCA 390263 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | ||||||||| || || || ||||| ||||| ||| |||| | ||| | Sbjct 390262 AAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTC-CTGAATTTTGGCTTTGAC 390204 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | | ||| || || | || | ||||| || || |||||||| Sbjct 390203 ATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTT 390144 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 390143 TACAAAAATCTGCAT 390129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| ||||| |||||||| || ||| | ||||| || || || || | | || Sbjct 390547 CCTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAG 390488 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TG 138542 || | | ||||||||| || || || ||||| ||||| ||| | || | ||||| | Sbjct 390487 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTT 390429 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||||| | | ||| || || | || | ||||||||||| || ||||| || Sbjct 390428 TTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCAC 390369 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 390368 GAAAATCTGCAT 390357 >seq2315 Length=138946 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||||||| ||||| | | ||| ||| || || || ||||| || | | | Sbjct 26965 TTTTGAATGTTATAGTC--TGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGT 138543 | | | ||| || || ||||| || || |||||||| ||| |||||| ||||| | Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTC 26849 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||| || | | |||||||| | || | ||||||||||| |||||||| ||| Sbjct 26848 TCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACA 26789 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 26788 AAAATCTGCAT 26778 >seq1551 Length=444118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||| | | |||| |||||||| || || |||||||| || | || || | Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| ||||| | ||| | ||||| | | ||| || || | || | ||||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| ||| || || ||||||||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496108608282240