Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq783 134 1e-26 seq2315 104 2e-17 seq1551 98.7 9e-16 >seq783 Length=580412 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || ||| | ||| | ||||| ||||| ||||| |||||||| Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || ||||| ||||||||| ||| || || || || Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| ||| |||| || | |||| || |||| | |||||| Sbjct 390235 ATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGAC 390177 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| ||||| ||||||||||||||||||||||| Sbjct 390176 TTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||||||| | ||| | ||||| ||||||||||| ||||| ||| Sbjct 390128 TCCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 390069 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||| || || || ||||||||| ||| || || || || Sbjct 390068 CAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGG 390009 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||| ||| ||| | | |||| || | ||||| ||||| | ||| | Sbjct 390008 AATGCCTTCCTTATCC-TGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAA 389950 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||||| || ||||| || |||||||||||||| Sbjct 389949 CTTCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || || || || ||||| ||||| || || || || ||| || Sbjct 391334 CACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTC 391275 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || ||||| ||||| |||| | ||||||||||| ||||| ||||||||||| ||| | Sbjct 391274 AAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC-T 391216 Query 127024 GATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || ||| |||| | | ||||| ||||| | | ||| ||||| | || | |||| Sbjct 391215 GAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTT 391156 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || || ||||||||||| Sbjct 391155 TGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 107 bits (118), Expect = 2e-18 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||||||||| || || || | ||| |||||||| || ||||| ||| Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTG 127041 |||||| ||| || || || || ||||| ||||||||| ||| | | |||| | ||| Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTT- 390429 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||||| ||||| | | ||||||||| | || | ||||| || || || ||||| || Sbjct 390428 TTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCAC 390369 Query 127102 AAAAATCTGCAT 127113 ||||||||||| Sbjct 390368 GAAAATCTGCAT 390357 >seq2315 Length=138946 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | ||||||||||| |||||||||||||| Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAA 33160 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| ||||| | || | || |||||| || ||||| Sbjct 33159 AGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGG 33100 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| | | ||| | | ||| || | | || | ||| || | | || || Sbjct 33099 ATTCCCTCCTTAT-CTTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCAC 33041 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | || || || |||| || || ||||| ||||||||| Sbjct 33040 TTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATG 32992 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||| || || || | ||||| ||| || |||||||| || ||| | | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGT 127042 |||||| ||||||||| ||||| || ||||| ||||| ||| ||| ||||| | | Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTC 26849 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||| || | || || || | ||| | ||||| || || |||||||| ||| Sbjct 26848 TCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACA 26789 Query 127103 AAAATCTGCAT 127113 ||||||||||| Sbjct 26788 AAAATCTGCAT 26778 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| |||||||| || || |||||| ||| || | |||||| || || | | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGT 127042 | |||||||||||||| || || || || || |||| | ||| ||| || ||| | | | Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGT-CTTGAATTTTTGCCTTTACATTT 28093 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||| || | || || || | || | |||||||| || || || || ||| Sbjct 28092 TCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACA 28033 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 28032 AATATCTGCAT 28022 >seq1551 Length=444118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| ||||| |||| | ||||||||||| |||||||||||| |||| ||| | Sbjct 25191 AGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGTATGCCCGCCTTATCCTGG 25250 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| || | | ||||| ||||| | | ||| ||||| | || | |||||| Sbjct 25251 ATTTTGGCTTTTACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTTTG 25310 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || ||||||||||| Sbjct 25311 CCAGTCAAAGTCTTGACGAAAATCTGCAT 25339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475353442302080