Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_011801.1 Length=38934 Score E Sequences producing significant alignments: (Bits) Value seq2602 100 7e-17 seq2641 98.7 2e-16 >seq2602 Length=70596 Score = 100 bits (110), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27587 AACGAATCTGGCCTTTACAGCTTAATTCTTTCCAGCAAGTTACCAACAGCCAAGAAGTTT 27646 ||||| || ||||| |||||||| ||||| |||||||| | || || |||||||||||| Sbjct 19945 AACGAGTCGGGCCTGTACAGCTTGATTCTCTCCAGCAAACTGCCCACGGCCAAGAAGTTT 19886 Query 27647 AAGCACTGGGTAACTAGTGAAGTCTTACCTGCAATCCGCAAGCACGGTGCTTA 27699 |||| |||||| || || || || | ||| | ||||||| |||||| || || Sbjct 19885 AAGCGCTGGGTGACCAGCGAGGTGCTCCCTTCCATCCGCAGGCACGGCGCCTA 19833 >seq2641 Length=91397 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27587 AACGAATCTGGCCTTTACAGCTTAATTCTTTCCAGCAAGTTACCAACAGCCAAGAAGTTT 27646 |||||||| ||||| |||||| | ||||| ||||||||| |||| || ||||||||||| Sbjct 87987 AACGAATCCGGCCTGTACAGCCTGATTCTGTCCAGCAAGCTACCCACCGCCAAGAAGTTC 87928 Query 27647 AAGCACTGGGTAACTAGTGAAGTCTTACCTGCAATCCGCAAGCACGGTGCTTAT 27700 || | |||||| || || || || | || | ||||||||||| || || ||| Sbjct 87927 AAACGCTGGGTGACCAGCGAGGTGCTCCCCTCCATCCGCAAGCATGGCGCCTAT 87874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124430556233984