Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq783 127 2e-24 seq2315 98.7 9e-16 seq211 98.7 9e-16 >seq783 Length=580412 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | |||||| ||||| || || ||||| ||||| || || || ||| Sbjct 390130 ATTCCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 390071 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | ||||||| || ||||| || Sbjct 390070 GACAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGG 390011 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| ||||| || ||||| ||| | ||||| || | ||| Sbjct 390010 GGAATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCA 389951 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | |||||||| || ||||| || |||||||| ||||| Sbjct 389950 ACTTCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || |||| ||| ||||| || || ||||| || || || || ||||| Sbjct 390358 ATACCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATC- 390300 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | || || | || || || || | ||||||| || ||||| | Sbjct 390299 -TGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTG 390241 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || || |||||||| ||||| || | || || |||| || Sbjct 390240 GGGGAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCT 390181 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 390180 CGACTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||||| || ||||| || ||||||||||| || || ||||| || ||| | | Sbjct 390487 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTT 390428 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| |||| ||||||||| | ||| | ||||| || || || ||||| || Sbjct 390427 TCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACG 390368 Query 45330 AAAATTTGCAT 45340 ||||| ||||| Sbjct 390367 AAAATCTGCAT 390357 >seq2315 Length=138946 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||||| |||||| | ||||||| ||||| || || ||||| || ||||| Sbjct 26933 ATCTTCCAGCTGTTTCCCTGCGAAAATCAATCTCTGCTGATCAGGAGGAATCCCCTCTTT 26874 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||| | || | ||| || || | || || || || || | Sbjct 26873 GTCTTGAATTTTTGCTTTTACATTCTCAATGGTATCAGATGGTTCCACCTCAAGGGTTAT 26814 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || |||||||| |||||||| |||||| Sbjct 26813 GGTTTTACCAGTAAGAGTTTTCACAAAAATCTGCATC 26777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATA 45210 ||||||||||| || || ||| || | || ||| ||||| ||||| ||||| | | Sbjct 28209 TTTTGGATATTGTAGTCC--GACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 | ||||| ||||| || || || || |||||||| |||||||||||| || | || Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||| || || | || || || || || | |||||||| || || || || |||| Sbjct 28091 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACAA 28032 Query 45331 AAATTTGCAT 45340 | || ||||| Sbjct 28031 ATATCTGCAT 28022 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTA 45208 ||||||| ||||| || || ||| || | | ||| ||||| ||||||||||| | Sbjct 29150 CCTTTTGAATATTGTAGTCC--GACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAA 29093 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 || ||||| |||||||| || || || |||||||| |||||||| ||| || | Sbjct 29092 AATTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATT 29033 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | ||| || || | || || || || || | ||||| || || || || || || Sbjct 29032 TTCAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCAC 28973 Query 45329 AAAAATTTGCAT 45340 ||| || ||||| Sbjct 28972 AAATATCTGCAT 28961 >seq211 Length=1809889 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166 ||||| ||||||||||||| ||||| ||| | ||||||||||| | | | || || Sbjct 922414 CAGTATGACATGTGGAATGTCACACCAACAGACCTGTGGGACTGGGCTGATCTGAAGAAA 922473 Query 124167 CGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACC 124226 || || | ||| ||| | || ||||| || | | || |||||| ||||| || Sbjct 922474 CGTATTGCACAGCATGGTGTTCGCAACTCTTTGCTTCTTGCTCCCATGCCTACGGCTTCC 922533 Query 124227 ACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTG 124286 ||||||||||| || |||||||| ||||| || ||||| | ||| | || | ||| Sbjct 922534 ACTGCTCAAATATTGGGAAACAATGAATCTTTTGAGCCATACACAACGAACATCTACTCA 922593 Query 124287 CGACGAGTGTTAGCCGGCGATTTTCAAGTGATAA 124320 || |||| | |||| || ||||| || |||| Sbjct 922594 AGAAGAGTTCTGTCCGGAGAATTTCAGGT-ATAA 922626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451863124208320