Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013195.1 Length=40761 Score E Sequences producing significant alignments: (Bits) Value seq6928 132 1e-26 seq3213 84.2 6e-12 >seq6928 Length=39225 Score = 132 bits (146), Expect = 1e-26 Identities = 269/396 (68%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 27981 TTACGCGTGCAATGGGTGATGCAGGTATTGAAGCTGATGAGTATCAAAGTGTACTTGATA 28040 |||| ||||| ||||| ||||| | ||| | || |||| ||| | ||| | |||| Sbjct 11146 TTACCCGTGCTATGGGGGATGCTGAGATTAATGCCAATGAATATGGTACTGTCTTGGATA 11087 Query 28041 TGGTAGCGAAAGCAGCACAGGCTAGCGGTATAAGTGTTGATACATTAGCTGATAGCATTA 28100 || | | ||| || || ||||| | ||||| ||||| | | | | Sbjct 11086 TGCTGACCGTAGCGGCGCAAAAGAGCGGGGTTTCAATTGATTCATTAACCGGAAATCTGG 11027 Query 28101 CTAAATACGGTGCTCCAATGAGGGCTATGGGCTTTGAGATGAAAGAATCAATCGCTTTAT 28160 | ||||| || || || ||| | || | || |||| | | || ||||| || | | Sbjct 11026 CGAAATATGGCGCGCCTATGCGTGCGCTTGGGCTTGATACGCAAACTTCAATTGCGATGT 10967 Query 28161 TCTCTCAATGGGAGAAATCAGGTGTTAATACTGAAATAGCCTTCAGTGGTTTGAAAAAAG 28220 | | |||||| ||| | |||||||||||||| || || ||||| || ||||||| | Sbjct 10966 TTGCCGGATGGGAAAAAGCGGGTGTTAATACTGAGATTGCATTCAGCGGGATGAAAAAGG 10907 Query 28221 CTATATCCAATTGGGGTAAAGCGGGTAAAGACCCAAGAGAAGAATTTAAGAAGACATTAG 28280 | || ||||| ||||| || || |||||| | || | |||||| || ||| | | Sbjct 10906 CAATTTCCAACTGGGGAGCCGCTGGAAAAGACGCGAGTGTAGAATTCGGAAAAACAAT-G 10848 Query 28281 CAGAAATTGAAAGGA--CACCGGATATAGCTAGCGCAACAAGTTTAGCGATTGAAGCATT 28338 ||| | | ||||| | |||||||| || | || || ||| | |||||||||||||| Sbjct 10847 CAGCAGAT-CAAGGATGCGCCGGATATTGCAACAGCGACCAGTATGGCGATTGAAGCATT 10789 Query 28339 TGGTGCAAAAGCAGGTCCTGATTTAGCAGATGCTAT 28374 ||| || ||||| || || |||||||| || ||||| Sbjct 10788 TGGAGCGAAAGCCGGCCCCGATTTAGCGGACGCTAT 10753 >seq3213 Length=2170589 Score = 84.2 bits (92), Expect = 6e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 11271 CTTTCACAACTGAATCGTGGCGTCGAGTCTAGACAGGATAAAAGACCAATGCTATCGGAC 11330 |||||||| || ||||| || || || ||| |||||| | ||||||||||| ||| Sbjct 369057 CTTTCACAGCTATCTCGTGCAGTAGAATCCAGAACTGATAAACGCCCAATGCTATCAGAC 369116 Query 11331 ATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCAATGTTACTTTACCGCGAT 11390 ||| ||||||||||| ||| || ||| ||| | | | |||||| |||| || ||| Sbjct 369117 TTGAGAGAATCAGGCGCAATTGAGCAAGACGCGGATATTGTAATGTTTATTTATCGTGAT 369176 Query 11391 GATTATTAT 11399 || |||||| Sbjct 369177 GAATATTAT 369185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130275235024592