Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq15409 105 8e-18
seq1599 89.7 6e-13
seq1094 89.7 6e-13
>seq15409
Length=3682
Score = 105 bits (116), Expect = 8e-18
Identities = 252/373 (68%), Gaps = 16/373 (4%)
Strand=Plus/Minus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| || || ||||| || ||||| | ||| | ||||| ||||| || ||
Sbjct 3343 CGGTCAAACCGGCCAGGGCGCAGCAGGGCTTTGTCCAAAATATCCGCCCGGTTGGTGGCG 3284
Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCAGTCAAGAGTTGA 12818
|| | || | | |||| ||||| || ||||| |||||||| || |||||
Sbjct 3283 GCAACCACGATAACGCCC---TCGTTGCCGTCAAAGCCGTCCATCTCCACCAGCAGTTGG 3227
Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTAC 12876
|| | ||| || |||||||| || | ||| | || | |||| | ||| || |
Sbjct 3226 TTCAGGGTCTGCTCACGTTCGTCGTGGCCGCCGCCAAGGC--CCGCGCCGCGCTGGCGGC 3169
Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGATTTTCACGGGCAACTTC 12934
| || || |||||||||||||| || |||||||| | | || ||| | || ||
Sbjct 3168 CCACCGCATCAATTTCGTCAATAAAGACGATACAGGGCGCTGTCTTTTTC--GCTTTGTC 3111
Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994
||| | ||| ||||| | |||| || || |||||| ||||||| ||||| |||| | |
Sbjct 3110 AAACAAATCCCGCACGCGGCTGGCGCCCACGCCCACATACATCTCTACAAAGTTGGAGCC 3051
Query 12995 GGAACATTGGAT-GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053
|| | || | || ||||| ||| | || ||||| ||| ||||| || ||||| |
Sbjct 3050 GG-AGATGGAATAAAAGGGTACGCCCGCCTCGCCCGCACAGGCGCGGGCCAGCAGGGTTT 2992
Query 13054 TCCCCGTCCCTGG 13066
| || || || ||
Sbjct 2991 TGCCGGTACCCGG 2979
>seq1599
Length=3738065
Score = 89.7 bits (98), Expect = 6e-13
Identities = 191/281 (68%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
||||| || ||||| || |||| ||||||||| | |||||||| ||||||||||| |
Sbjct 3256147 TCGAAACCGTCCATTTCTGTCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC- 3256205
Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906
|| | ||| | | ||||| |||||| | || || || || || ||||||| ||
Sbjct 3256206 -GCCTCCCAGTGCGTTATCGCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGA 3256264
Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966
|||| || || |||| || | ||||| ||| || ||| | || || | |
Sbjct 3256265 TACAAGGGGCTTTCTCACTTGCCTGCTTAAAGAGATCGCGGACTTTGGCTGCTCCCATGC 3256324
Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCA 13025
| |||||||||| ||||| | || | | | || | | ||| || || || | |||
Sbjct 3256325 CGACAAACATCTGTACAAATTCGGAACCTG-ATATGGAAAAGAACGGTACTTTTGCCTCA 3256383
Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
|| || | || ||||||| |||||||| || || || ||
Sbjct 3256384 CCTGCCACAGCGCGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424
>seq1094
Length=2708314
Score = 89.7 bits (98), Expect = 6e-13
Identities = 191/281 (68%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
||||| |||||||| || |||| |||||| || | ||||||||||||||||||||| |
Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582
Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906
|| | ||| | | |||| ||| || | ||| || ||||| |||||||| | ||
Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641
Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966
| || ||| ||||| | || | ||| | || || ||| | || || | ||
Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTACTTTGGCTGCTCCCATAC 198701
Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCA 13025
| |||||||||| ||||| | | ||| | || | || || || || || | |||
Sbjct 198702 CGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTTCG 198760
Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
|| || | ||| ||||| | ||||| || || || || ||
Sbjct 198761 CCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613317074118720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |