Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15409 105 8e-18 seq1599 89.7 6e-13 seq1094 89.7 6e-13 >seq15409 Length=3682 Score = 105 bits (116), Expect = 8e-18 Identities = 252/373 (68%), Gaps = 16/373 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || ||||| || ||||| | ||| | ||||| ||||| || || Sbjct 3343 CGGTCAAACCGGCCAGGGCGCAGCAGGGCTTTGTCCAAAATATCCGCCCGGTTGGTGGCG 3284 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | || | | |||| ||||| || ||||| |||||||| || ||||| Sbjct 3283 GCAACCACGATAACGCCC---TCGTTGCCGTCAAAGCCGTCCATCTCCACCAGCAGTTGG 3227 Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTAC 12876 || | ||| || |||||||| || | ||| | || | |||| | ||| || | Sbjct 3226 TTCAGGGTCTGCTCACGTTCGTCGTGGCCGCCGCCAAGGC--CCGCGCCGCGCTGGCGGC 3169 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGATTTTCACGGGCAACTTC 12934 | || || |||||||||||||| || |||||||| | | || ||| | || || Sbjct 3168 CCACCGCATCAATTTCGTCAATAAAGACGATACAGGGCGCTGTCTTTTTC--GCTTTGTC 3111 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| | ||| ||||| | |||| || || |||||| ||||||| ||||| |||| | | Sbjct 3110 AAACAAATCCCGCACGCGGCTGGCGCCCACGCCCACATACATCTCTACAAAGTTGGAGCC 3051 Query 12995 GGAACATTGGAT-GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 || | || | || ||||| ||| | || ||||| ||| ||||| || ||||| | Sbjct 3050 GG-AGATGGAATAAAAGGGTACGCCCGCCTCGCCCGCACAGGCGCGGGCCAGCAGGGTTT 2992 Query 13054 TCCCCGTCCCTGG 13066 | || || || || Sbjct 2991 TGCCGGTACCCGG 2979 >seq1599 Length=3738065 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 ||||| || ||||| || |||| ||||||||| | |||||||| ||||||||||| | Sbjct 3256147 TCGAAACCGTCCATTTCTGTCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC- 3256205 Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 || | ||| | | ||||| |||||| | || || || || || ||||||| || Sbjct 3256206 -GCCTCCCAGTGCGTTATCGCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGA 3256264 Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 |||| || || |||| || | ||||| ||| || ||| | || || | | Sbjct 3256265 TACAAGGGGCTTTCTCACTTGCCTGCTTAAAGAGATCGCGGACTTTGGCTGCTCCCATGC 3256324 Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCA 13025 | |||||||||| ||||| | || | | | || | | ||| || || || | ||| Sbjct 3256325 CGACAAACATCTGTACAAATTCGGAACCTG-ATATGGAAAAGAACGGTACTTTTGCCTCA 3256383 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || | || ||||||| |||||||| || || || || Sbjct 3256384 CCTGCCACAGCGCGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424 >seq1094 Length=2708314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 ||||| |||||||| || |||| |||||| || | ||||||||||||||||||||| | Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582 Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 || | ||| | | |||| ||| || | ||| || ||||| |||||||| | || Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641 Query 12907 TACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 | || ||| ||||| | || | ||| | || || ||| | || || | || Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTACTTTGGCTGCTCCCATAC 198701 Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCA 13025 | |||||||||| ||||| | | ||| | || | || || || || || | ||| Sbjct 198702 CGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTTCG 198760 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || | ||| ||||| | ||||| || || || || || Sbjct 198761 CCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613317074118720