Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_013646.1
Length=38764
Score E
Sequences producing significant alignments: (Bits) Value
seq3213 107 5e-19
seq1690 89.7 1e-13
seq1191 89.7 1e-13
>seq3213
Length=2170589
Score = 107 bits (118), Expect = 5e-19
Identities = 243/359 (68%), Gaps = 10/359 (3%)
Strand=Plus/Plus
Query 10481 GaaaaaaaTACTTGATGTATGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAACGA 10540
||||| ||| | |||| || ||||| || | |||||| |||||||| || ||
Sbjct 780882 GAAAACAATCTTAGATGCTTGTTGTGGAAGTCGTATGTTTCATTTTGATAAACATAATAG 780941
Query 10541 CCAAGTTTTGTTTATGGATAACAGAAAGCATTAC--GAAAAATTAGACAGTGG--GCATG 10596
||||| | ||||||||||| |||| |||| ||||| || | ||| | ||
Sbjct 780942 GAAAGTTCTATTTATGGATAATCGAAA--ATTAGAAGAAAACCTATGCGATGGCAGAATA 780999
Query 10597 TTATCGATGTTAATCCTAATCTAGTTGCAGATTTTAGAAAGATGCCTTTTGAAGATAACT 10656
||| | || |||||| | | || || || ||| | | |||||||||| || ||
Sbjct 781000 TTAA--AAGTAAATCCTGACATTGTGGCCGACTTTCGCCATATGCCTTTTGCTAATGACA 781057
Query 10657 CGTTTTATCATGTTGTATTTGATCCTCCGCATTT-ATTGAGGTGTGGTAATAACAGCTGG 10715
||| || ||| | || || || || ||||| | | || ||| | | || |||
Sbjct 781058 GCTTTAATATGGTTATCTTCGACCCACCTCATTTGACAAAAGT-TGGCGAAACAAGTTGG 781116
Query 10716 TTGGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAGATATACAAAAAGGT 10775
|| ||||||||| ||||| ||||| | | |||||| || | |||||| || ||||
Sbjct 781117 ATGTGTAAAAAATACGGCAAATTAAACAAAGACACTTGGCAATATGATATAAAACAAGGA 781176
Query 10776 TTTCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTTTTAAATGGAACGA 10834
||| ||||||||||||| ||| | || ||| || || |||||||| |||| |||
Sbjct 781177 TTTGATGAGTGTATGAGAGTTCTCAAAGTTGGTGGTACATTGGTTTTTAAGTGGAGCGA 781235
>seq1690
Length=1574822
Score = 89.7 bits (98), Expect = 1e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 37849 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCATAGGTTCGAG 37908
|||||||||||||||||||||||||| | | ||||||||| | | |||| | ||||||||
Sbjct 661389 GGACCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTTGGTTCGAG 661330
Query 37909 TCCTGTATGGTCCA 37922
|||| ||||||||
Sbjct 661329 TCCTAGATGGTCCA 661316
>seq1191
Length=1801643
Score = 89.7 bits (98), Expect = 1e-13
Identities = 251/370 (68%), Gaps = 28/370 (8%)
Strand=Plus/Minus
Query 10482 aaaaaaaTACTTGATGTATGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAACGAC 10541
|| ||||||||||||| || ||||| | ||||||||||||| |||||||||||| |
Sbjct 1470252 AAGAAAATACTTGATGCCTGTTGTGGCTCCCGAATGTTTTGGTTCGATAAGCAAAAC--C 1470195
Query 10542 CAAGTT--TTGTTTATGGATAACAGAA----AGCA-TTACGAAAAATTAGACAGTGGGCA 10594
| | | || || || ||||| |||| | || ||||| || ||||| | |
Sbjct 1470194 CGAATACATTATTCATAGATAATAGAAGCGAAACACTTACGGCCAAG--GACAGAGATAA 1470137
Query 10595 TGTTA------TCGATGTTAATCCTAATCTAG-TTGCAGATTTTAGAAAGATGCCTTTTG 10647
| | | || ||| || | | || |||| ||||| | ||| |||| ||||
Sbjct 1470136 AATAAGGACAATAGAAGTTTTACCCGA-CAAGATTGCCGATTTCACAAATTTGCCATTTG 1470078
Query 10648 A-AGATAACTCGTTT-TATCATGTTGTATTTGATCCTCCGCATTTATTGAGGTGTGGTAA 10705
|| || |||| ||| ||||| || || ||||| |||||| | ||| |
Sbjct 1470077 CTAGTGAAA--GTTTCTATATGGTTGTTTTCGACCCTCCACATTTAAAGCAACTTGGAGA 1470020
Query 10706 TAACAGC-TGGTTGGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAGATA 10764
|||| | ||| | || ||||||||||||||||| | || |||| || | |||| |
Sbjct 1470019 -AACATCATGGCTCGCAAAAAAATATGGCAAGCTG--CCTGACAACT-GGCAGGAAGTAA 1469964
Query 10765 TACAAAAAGGTTTTCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTTTTA 10824
|| |||||| ||| |||| |||||| | || || ||||| ||||| | | |||| |
Sbjct 1469963 TAAGAAAAGGATTTGATGAATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTTTCA 1469904
Query 10825 AATGGAACGA 10834
||||||||||
Sbjct 1469903 AATGGAACGA 1469894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123886716390304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |