Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013646.1 Length=38764 Score E Sequences producing significant alignments: (Bits) Value seq3213 107 5e-19 seq1690 89.7 1e-13 seq1191 89.7 1e-13 >seq3213 Length=2170589 Score = 107 bits (118), Expect = 5e-19 Identities = 243/359 (68%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 10481 GaaaaaaaTACTTGATGTATGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAACGA 10540 ||||| ||| | |||| || ||||| || | |||||| |||||||| || || Sbjct 780882 GAAAACAATCTTAGATGCTTGTTGTGGAAGTCGTATGTTTCATTTTGATAAACATAATAG 780941 Query 10541 CCAAGTTTTGTTTATGGATAACAGAAAGCATTAC--GAAAAATTAGACAGTGG--GCATG 10596 ||||| | ||||||||||| |||| |||| ||||| || | ||| | || Sbjct 780942 GAAAGTTCTATTTATGGATAATCGAAA--ATTAGAAGAAAACCTATGCGATGGCAGAATA 780999 Query 10597 TTATCGATGTTAATCCTAATCTAGTTGCAGATTTTAGAAAGATGCCTTTTGAAGATAACT 10656 ||| | || |||||| | | || || || ||| | | |||||||||| || || Sbjct 781000 TTAA--AAGTAAATCCTGACATTGTGGCCGACTTTCGCCATATGCCTTTTGCTAATGACA 781057 Query 10657 CGTTTTATCATGTTGTATTTGATCCTCCGCATTT-ATTGAGGTGTGGTAATAACAGCTGG 10715 ||| || ||| | || || || || ||||| | | || ||| | | || ||| Sbjct 781058 GCTTTAATATGGTTATCTTCGACCCACCTCATTTGACAAAAGT-TGGCGAAACAAGTTGG 781116 Query 10716 TTGGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAGATATACAAAAAGGT 10775 || ||||||||| ||||| ||||| | | |||||| || | |||||| || |||| Sbjct 781117 ATGTGTAAAAAATACGGCAAATTAAACAAAGACACTTGGCAATATGATATAAAACAAGGA 781176 Query 10776 TTTCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTTTTAAATGGAACGA 10834 ||| ||||||||||||| ||| | || ||| || || |||||||| |||| ||| Sbjct 781177 TTTGATGAGTGTATGAGAGTTCTCAAAGTTGGTGGTACATTGGTTTTTAAGTGGAGCGA 781235 >seq1690 Length=1574822 Score = 89.7 bits (98), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 37849 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCATAGGTTCGAG 37908 |||||||||||||||||||||||||| | | ||||||||| | | |||| | |||||||| Sbjct 661389 GGACCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTTGGTTCGAG 661330 Query 37909 TCCTGTATGGTCCA 37922 |||| |||||||| Sbjct 661329 TCCTAGATGGTCCA 661316 >seq1191 Length=1801643 Score = 89.7 bits (98), Expect = 1e-13 Identities = 251/370 (68%), Gaps = 28/370 (8%) Strand=Plus/Minus Query 10482 aaaaaaaTACTTGATGTATGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAACGAC 10541 || ||||||||||||| || ||||| | ||||||||||||| |||||||||||| | Sbjct 1470252 AAGAAAATACTTGATGCCTGTTGTGGCTCCCGAATGTTTTGGTTCGATAAGCAAAAC--C 1470195 Query 10542 CAAGTT--TTGTTTATGGATAACAGAA----AGCA-TTACGAAAAATTAGACAGTGGGCA 10594 | | | || || || ||||| |||| | || ||||| || ||||| | | Sbjct 1470194 CGAATACATTATTCATAGATAATAGAAGCGAAACACTTACGGCCAAG--GACAGAGATAA 1470137 Query 10595 TGTTA------TCGATGTTAATCCTAATCTAG-TTGCAGATTTTAGAAAGATGCCTTTTG 10647 | | | || ||| || | | || |||| ||||| | ||| |||| |||| Sbjct 1470136 AATAAGGACAATAGAAGTTTTACCCGA-CAAGATTGCCGATTTCACAAATTTGCCATTTG 1470078 Query 10648 A-AGATAACTCGTTT-TATCATGTTGTATTTGATCCTCCGCATTTATTGAGGTGTGGTAA 10705 || || |||| ||| ||||| || || ||||| |||||| | ||| | Sbjct 1470077 CTAGTGAAA--GTTTCTATATGGTTGTTTTCGACCCTCCACATTTAAAGCAACTTGGAGA 1470020 Query 10706 TAACAGC-TGGTTGGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAGATA 10764 |||| | ||| | || ||||||||||||||||| | || |||| || | |||| | Sbjct 1470019 -AACATCATGGCTCGCAAAAAAATATGGCAAGCTG--CCTGACAACT-GGCAGGAAGTAA 1469964 Query 10765 TACAAAAAGGTTTTCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTTTTA 10824 || |||||| ||| |||| |||||| | || || ||||| ||||| | | |||| | Sbjct 1469963 TAAGAAAAGGATTTGATGAATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTTTCA 1469904 Query 10825 AATGGAACGA 10834 |||||||||| Sbjct 1469903 AATGGAACGA 1469894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123886716390304