Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq714 86.0 1e-11 seq211 86.0 1e-11 >seq714 Length=734366 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/202 (70%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 ||||||||||| || |||||||| || || || |||||| |||||| || | | || Sbjct 47779 GTACATTTCTGAATGAACATTTTCCATTGCAATTTGAAAGCCATAGAAACATCTTG-CTT 47837 Query 160276 CAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGG 160334 | | || || || || || |||| |||| | || || |||| || | || || | Sbjct 47838 CTGTGACTTGTACTTCTTGGCTGAATCTTTCTACAAGGTTTTCATTTACAATTCCATCTG 47897 Query 160335 CGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCT 160394 || |||||||| || | ||||| || |||||||| || || || || | ||| | Sbjct 47898 ATGCTGCAAAGAATGCAAGTACGTGTGATATGAAATGCCTTTCATCATTTGTAAGT---T 47954 Query 160395 TTTCCCAGTGTGTCACGTCTTG 160416 |||||||||| |||| ||| || Sbjct 47955 TTTCCCAGTGGGTCATGTCCTG 47976 >seq211 Length=1809889 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||||||||| || | || | | | | ||| | ||| |||| || || | Sbjct 922620 CTGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAAGA 922561 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 || ||||| || || || ||||| ||| ||||| ||||||||||| || |||| || Sbjct 922560 TTCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGCAAGAAGCAAAGA 922501 Query 204316 GTTGCGCACACC 204327 |||||| ||||| Sbjct 922500 GTTGCGAACACC 922489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794908781403520