Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013696.1 Length=42822 Score E Sequences producing significant alignments: (Bits) Value seq3213 109 2e-19 seq1191 87.8 5e-13 >seq3213 Length=2170589 Score = 109 bits (120), Expect = 2e-19 Identities = 241/357 (68%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 35818 GAAAAGAATACTTGATGCTTGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAACGA 35877 ||||| ||| | |||||||| ||||| || | |||||| |||||||| || || Sbjct 780882 GAAAACAATCTTAGATGCTTGTTGTGGAAGTCGTATGTTTCATTTTGATAAACATAATAG 780941 Query 35878 ACAAGTTTTGTTTATGGACAACAGAGAACATTACGAAAAATTAGACAGTGG--GCATGTT 35935 ||||| | |||||||| || || || | ||||| || | ||| | || || Sbjct 780942 GAAAGTTCTATTTATGGATAATCGAAAATTAGAAGAAAACCTATGCGATGGCAGAATATT 781001 Query 35936 ATCGATGTTAATCCTAATCTAGTTGCAGATTTTAGAAAGATGCCTTTTGAAGATAACTCG 35995 | | || |||||| | | || || || ||| | | |||||||||| || || Sbjct 781002 AA--AAGTAAATCCTGACATTGTGGCCGACTTTCGCCATATGCCTTTTGCTAATGACAGC 781059 Query 35996 TTTTATCATGTTGTATTTGATCCTCCGCATTT-ATTGAGGTGTGGTAATAACAGCTGGTT 36054 ||| || ||| | || || || || ||||| | | || ||| | | || ||| | Sbjct 781060 TTTAATATGGTTATCTTCGACCCACCTCATTTGACAAAAGT-TGGCGAAACAAGTTGGAT 781118 Query 36055 GGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAGATATACAAAAAGGTTT 36114 | ||||||||| ||||| ||||| | | |||||| || | |||||| || |||| || Sbjct 781119 GTGTAAAAAATACGGCAAATTAAACAAAGACACTTGGCAATATGATATAAAACAAGGATT 781178 Query 36115 TCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTTTTAAATGGAACGA 36171 | ||||||||||||| ||| | || ||| || || |||||||| |||| ||| Sbjct 781179 TGATGAGTGTATGAGAGTTCTCAAAGTTGGTGGTACATTGGTTTTTAAGTGGAGCGA 781235 >seq1191 Length=1801643 Score = 87.8 bits (96), Expect = 5e-13 Identities = 253/373 (68%), Gaps = 30/373 (8%) Strand=Plus/Minus Query 35818 GAAAAGAA--TACTTGATGCTTGCTGTGGTAGCAGAATGTTTTGGTTTGATAAGCAAAAC 35875 |||||||| |||||||||| || ||||| | ||||||||||||| |||||||||||| Sbjct 1470255 GAAAAGAAAATACTTGATGCCTGTTGTGGCTCCCGAATGTTTTGGTTCGATAAGCAAAAC 1470196 Query 35876 --GAACAAGTTTTGTTTATGGACAACAGAG----AACA-TTACGAAAAATTAGACAGTGG 35928 ||| | || | | || || || ||| |||| ||||| || ||||| | Sbjct 1470195 CCGAATACATTAT--TCATAGATAATAGAAGCGAAACACTTACGGCCAAG--GACAGAGA 1470140 Query 35929 GCATGTTA------TCGATGTTAATCCTAATCTAG-TTGCAGATTTTAGAAAGATGCCTT 35981 | | | | || ||| || | | || |||| ||||| | ||| |||| | Sbjct 1470139 TAAAATAAGGACAATAGAAGTTTTACCCGA-CAAGATTGCCGATTTCACAAATTTGCCAT 1470081 Query 35982 TTGA-AGATAACTCGTTT-TATCATGTTGTATTTGATCCTCCGCATTTATTGAGGTGTGG 36039 ||| || || |||| ||| ||||| || || ||||| |||||| | ||| Sbjct 1470080 TTGCTAGTGAAA--GTTTCTATATGGTTGTTTTCGACCCTCCACATTTAAAGCAACTTGG 1470023 Query 36040 TAATAACAGC-TGGTTGGCTAAAAAATATGGCAAGCTAAACGAGAAAACTTGGAAAGAAG 36098 | |||| | ||| | || ||||||||||||||||| | || |||| || | |||| Sbjct 1470022 AGA-AACATCATGGCTCGCAAAAAAATATGGCAAGCTG--CCTGACAACT-GGCAGGAAG 1469967 Query 36099 ATATACAAAAAGGTTTTCATGAGTGTATGAGGGTTTTGAAGCCCAATGGGACGTTAGTTT 36158 ||| |||||| ||| |||| |||||| | || || ||||| ||||| | | ||| Sbjct 1469966 TAATAAGAAAAGGATTTGATGAATGTATGCGTGTATTAAAGCCAAATGGAGCTCTTATTT 1469907 Query 36159 TTAAATGGAACGA 36171 | ||||||||||| Sbjct 1469906 TCAAATGGAACGA 1469894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136868493364736