Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq783 131 4e-25 seq2315 113 1e-19 seq779 96.9 8e-15 >seq783 Length=580412 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | ||||||||| || ||||| || | ||||||||||| || || | | Sbjct 391342 AGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGT 391283 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || || || || || ||||| ||||||||||| || ||| ||| || || Sbjct 391282 CCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCC 391223 Query 199532 CGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 |||||||| ||| || ||||| ||||| ||||||| | || || ||||| || Sbjct 391222 TTATCCTGAAT-TTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGT 391164 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || | ||| || || ||||| || Sbjct 391163 GATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTG 391128 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || || || ||||| | ||||||||| | || || Sbjct 390121 CGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTT 390062 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| |||||||| ||||| ||||| | | ||| ||||| || ||| ||| Sbjct 390061 CGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCT 390002 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| || || ||||| ||||||| | || || || | Sbjct 390001 TCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGA 389942 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| ||||||||||| || Sbjct 389941 GTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTG 389904 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| | || |||||||||||| || |||||||| || || ||||| | | ||| Sbjct 390535 TTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGATCAATCTCTGT 390476 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 ||||| || ||| ||||| ||||||||||| || ||| ||||| |||||| Sbjct 390475 TGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTTCGATCGTGTCT 390416 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || || ||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 390415 GAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGAAAATCTG 390360 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| ||||| ||||| || || || || || | |||||| || | | ||| Sbjct 390349 CGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTT 390290 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || ||||| | | ||| ||||| || ||| ||| Sbjct 390289 CGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCT 390230 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| ||| || || || |||| || || | | || || ||||| Sbjct 390229 TCCTTGTCCTGAAT-TTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAA 390171 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| |||||||| || Sbjct 390170 AGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTG 390132 >seq2315 Length=138946 Score = 113 bits (124), Expect = 1e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | |||||||| | || || | |||||||||| ||| ||||| || || | Sbjct 29150 CCTTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAA 29091 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||||||||| || ||||||||| || ||||||||| ||| || || Sbjct 29090 TTAATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTT 29031 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | ||| || | || |||||| |||| ||||| || || || ||||| || ||||||| Sbjct 29030 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAA 28971 Query 199620 AAATTTG 199626 | || || Sbjct 28970 ATATCTG 28964 Score = 95.1 bits (104), Expect = 3e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | ||| ||||| | | || | ||||||||||||||| || || ||||| || Sbjct 26965 TTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAATC 26906 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTC 199560 | | |||||| || ||| ||| || ||| || ||||| |||||||| || || Sbjct 26905 AATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAAT-TTTTGCTTTTACATTCTC 26847 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | ||| || | || ||| || || | || || || ||||| || |||||||||||||| Sbjct 26846 AATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAAA 26787 Query 199621 AATTTG 199626 ||| || Sbjct 26786 AATCTG 26781 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | |||||| |||| || || | ||||| ||||||||||| || || ||||| Sbjct 27318 TTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATA 27259 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || | ||||| || ||| ||| ||||| || || |||||| || || ||| Sbjct 27258 AGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTTCA 27199 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | || || | || ||| || ||||| ||||| || || || || | ||| || || || Sbjct 27198 ATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGAAG 27139 Query 199622 ATTTG 199626 ||||| Sbjct 27138 ATTTG 27134 >seq779 Length=683570 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||||||||| || |||| |||||||| | |||||| | |||||| Sbjct 346010 AGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTGACAAAGTGCGGCCATCT 345951 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||| ||||| ||||| |||||||| || Sbjct 345950 TCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTCTGG 345910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178547118501064