Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq783 105 8e-18 seq779 87.8 2e-12 >seq783 Length=580412 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| ||||| | |||| || ||||| || ||||||||||| || || || | Sbjct 390115 CGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCA 390056 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || ||||| | ||| ||||| | || | || ||||| Sbjct 390055 TCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTA 389996 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| |||| | | | ||||| | || || || | |||||| Sbjct 389995 TCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGATG 389936 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||||| || || || || ||||| || |||||| Sbjct 389935 GTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 389900 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||| ||||| | |||| || || || || ||||| || || ||||| || |||| Sbjct 390341 CAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTC 390282 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||| || || ||||| | ||| ||||| | || | || |||||||| Sbjct 390281 CTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 390222 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || |||| || | | ||| || | || || |||| || || || Sbjct 390221 CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGT 390162 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || ||||| ||||| || |||||| Sbjct 390161 TTTCCCGGTAAGAGTTTTTACAAAAATCTGCATT 390128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || ||||| | | || || ||||||||||| || || Sbjct 390547 CCTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAG 390488 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 ||||| | ||| ||||| | || | || ||||||||| ||||| ||| | || | Sbjct 390487 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTT-GGCTTTAACGTT 390429 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | || || |||| ||||||||||| || || || ||||| || Sbjct 390428 TTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCAC 390369 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 390368 GAAAATCTGCAT 390357 >seq779 Length=683570 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | ||||||||| | || ||| || |||||||||||||| || Sbjct 346025 CCACCTCTCAAGCGAAGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTGAC 345966 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | |||||| | || || |||||||||||||| || |||| || |||||||| Sbjct 345965 AAAGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTC 345913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565063232619840