Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq126 102 1e-16 seq1094 100 4e-16 seq1599 84.2 3e-11 >seq126 Length=3533043 Score = 102 bits (112), Expect = 1e-16 Identities = 247/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || || || || |||||||| || || | ||| | | | ||| || || ||||| || Sbjct 304019 TCGAAACGCCCCGGGCGAAGCAGGGCTTTATCTAAGCTTTCAGGCCGGTTTGTTGCAGCA 303960 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | | |||| |||| ||| ||| ||||||||||| || ||||||||||| || | Sbjct 303959 AGTATTACAACACCTTTTTTCCCATCGAAACCATCCATTTCCGTCAAAAGCTGATTTAAG 303900 Query 16008 GTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 |||||||||||||||||||| | || || | || | | || | |||||| | Sbjct 303899 GTTTGTTCCCGTTCATCATTGCCCCCTCCCAAAGCATTATC---CCGCTTCTTTCCGATT 303843 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 | ||| || ||||||||||| | ||| || || || || || || || ||| Sbjct 303842 GTATCTATTTCATCAATGAAAATGATACAAGGAGCTTTCTCATTTGCCTGTTTGAAAAGA 303783 Query 16125 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 ||||| ||| ||| || |||| ||| |||||||| | ||||| | | ||| | Sbjct 303782 TCCCG--CACTTTTGCAGCCCCCATACCCACAAACATTTGAACAAATTCCGATCCGG-AT 303726 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || || || | ||||| || | || ||||| | | ||| || || Sbjct 303725 ATGGAGAAGAAAGGTACTTTTGCCTCACCTGCTACTGCGCGGGCAATTAAAGTTTTTCCT 303666 Query 16242 GTACCTGG 16249 || || || Sbjct 303665 GTTCCCGG 303658 >seq1094 Length=2708314 Score = 100 bits (110), Expect = 4e-16 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || || |||||||| || |||| || ||||| | |||||||| ||||||||||| | Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582 Query 16032 GGCATACCAC--CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 || | ||| | | |||| ||| || | |||||| || ||||||||||||| || Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641 Query 16090 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCAC 16147 |||| ||| ||||||| ||| | ||| || || ||||| ||| || |||| Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTACTTTGGCT--GCTCCCAT 198699 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 ||| |||||||||| ||||| | || ||| | || | || || || || || | || Sbjct 198700 ACCGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTT 198758 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || | ||| ||||| | || || || || || || || Sbjct 198759 CGCCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801 >seq1599 Length=3738065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 220/329 (67%), Gaps = 24/329 (7%) Strand=Plus/Plus Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA--TCAAAACCATCCATCTCTG 15990 ||||| ||||| |||| | ||| | ||| ||| || || ||||| ||||| |||| Sbjct 3256108 CGATTGGTTGCAGCGAGTATAACTACGCCT--TTCTTTCCGTCGAAACCGTCCATTTCTG 3256165 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 16048 ||| || || || | |||||||||||||||||||| | || | ||| | | Sbjct 3256166 TCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC--GCCTCCCAGTGCGTTATC 3256223 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 16108 ||||| ||| || | || ||| |||||||| ||||| | ||| || || || || | Sbjct 3256224 GCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGATACAAGGGGCTTTCTCACT 3256283 Query 16109 AGCGACTTCAAAGAGATCCCGTAC--ACGCTTGGCGCCCACACCAACAAACATCTCCACA 16166 || | ||||||||| || || ||| || |||| || |||||||||| ||| Sbjct 3256284 TGCCTGCTTAAAGAGATCGCGGACTTTGGCT--GCTCCCATGCCGACAAACATCTGTACA 3256341 Query 16167 AAGTTTGCGGCGGAACAT----TGG--ATGAAGGGGACATTAGATTCACCCGCAATGGCT 16220 || | |||||| | ||| | ||| || || || | ||||| || | || Sbjct 3256342 AATT------CGGAACCTGATATGGAAAAGAACGGTACTTTTGCCTCACCTGCCACAGCG 3256395 Query 16221 CGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||||| || ||||| || || || || Sbjct 3256396 CGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620550031930240