Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1094 96.9 4e-15 seq1599 93.3 5e-14 seq126 89.7 6e-13 seq179 84.2 3e-11 seq211 82.4 9e-11 >seq1094 Length=2708314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 || || |||||||| || |||| |||||||| | |||||||| ||||||||||| | Sbjct 198524 TCGAACCCATCCATTTCGGTCAGGAGTTGGTTCAGGGTTTGTTCACGTTCATCATTACC- 198582 Query 9339 GGCATACCAC--CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 || | ||| | | |||| ||| || | |||||| || ||||||||||||| | Sbjct 198583 -GCCTCCCAAGGCGTTATCACGTTTCTTGCCAATGGCATCTATTTCATCAATGAAGATGA 198641 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG--GCGCCCAC 9454 | || ||| ||||||| || | ||| || ||||| | |||| | || |||| Sbjct 198642 TGCAAGGTGCTTTTTCGCCAGCCTGCTTAAACAGGTCGCGTA--CTTTGGCTGCTCCCAT 198699 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9513 ||| |||||||||| ||||| | || ||| | || | || || || || || | || Sbjct 198700 ACCGACAAACATCTGTACAAACTCTGAACCGG-ATATAGAGAAAAACGGAACTTTCGCTT 198758 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || | ||| ||||| | || || || || || || || Sbjct 198759 CGCCTGCTACGGCACGGGCAATCAGGGTTTTTCCTGTTCCCGG 198801 >seq1599 Length=3738065 Score = 93.3 bits (102), Expect = 5e-14 Identities = 222/329 (67%), Gaps = 24/329 (7%) Strand=Plus/Plus Query 9240 CGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTG 9297 ||||| || || |||| | ||| | ||| ||| || || ||||| ||||| |||| Sbjct 3256108 CGATTGGTTGCAGCGAGTATAACTACGCCT--TTCTTTCCGTCGAAACCGTCCATTTCTG 3256165 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355 ||| ||||| || | |||||||||||||||||||| | || | ||| | | Sbjct 3256166 TCAGGAGTTGATTCAGCGTTTGTTCCCGTTCATCATTACC--GCCTCCCAGTGCGTTATC 3256223 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 ||||| ||| || | || ||| |||||||| ||||| | ||||| || || || | Sbjct 3256224 GCGTTTCTTACCAATGGTATCTATCTCATCTATGAAAATGATACAAGGGGCTTTCTCACT 3256283 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTG--GCGCCCACACCAACAAACATCTCCACA 9473 || | |||||||||||| | |||| | || |||| || |||||||||| ||| Sbjct 3256284 TGCCTGCTTAAAGAGATCGCGGA--CTTTGGCTGCTCCCATGCCGACAAACATCTGTACA 3256341 Query 9474 AAGTTTGCGGCGGAACAT----TGG--ATGAAGGGGACATTAGATTCACCCGCAATGGCT 9527 || | |||||| | ||| | ||| || || || | ||||| || | || Sbjct 3256342 AATT------CGGAACCTGATATGGAAAAGAACGGTACTTTTGCCTCACCTGCCACAGCG 3256395 Query 9528 CGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||||| || ||||| || || || || Sbjct 3256396 CGGGCGATCAGGGTCTTTCCTGTTCCCGG 3256424 >seq126 Length=3533043 Score = 89.7 bits (98), Expect = 6e-13 Identities = 244/368 (66%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 || || || || || ||||| || || | ||| | | | ||| || || || || || Sbjct 304019 TCGAAACGCCCCGGGCGAAGCAGGGCTTTATCTAAGCTTTCAGGCCGGTTTGTTGCAGCA 303960 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | | |||| |||| ||| ||| ||||||||||| || |||||||| || || | Sbjct 303959 AGTATTACAACACCTTTTTTCCCATCGAAACCATCCATTTCCGTCAAAAGCTGATTTAAG 303900 Query 9315 GTTTGTTCCCGTTCATCATT---CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 |||||||||||||||||||| | || || | || | | || | |||||| | Sbjct 303899 GTTTGTTCCCGTTCATCATTGCCCCCTCCCAAAGCATTATC---CCGCTTCTTTCCGATT 303843 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 | ||| || ||||||||||| | ||||| || || || || || || ||| Sbjct 303842 GTATCTATTTCATCAATGAAAATGATACAAGGAGCTTTCTCATTTGCCTGTTTGAAAAGA 303783 Query 9432 TCGCGAACCCTTTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 || || | |||||| || |||| ||| |||||||| | ||||| | | ||| | Sbjct 303782 TCCCG--CACTTTTGCAGCCCCCATACCCACAAACATTTGAACAAATTCCGATCCGG-AT 303726 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || | || ||| || || || | ||||| || | || ||||| | | ||| || || Sbjct 303725 ATGGAGAAGAAAGGTACTTTTGCCTCACCTGCTACTGCGCGGGCAATTAAAGTTTTTCCT 303666 Query 9549 GTACCTGG 9556 || || || Sbjct 303665 GTTCCCGG 303658 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/284 (68%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||| |||||||| || || | ||||| || | ||||||||||| ||| ||||| || Sbjct 486350 TCAAATCCATCCATTTCAGTAAGTAGTTGATTCAGAGTTTGTTCCCTTTCGTCATTTCCT 486291 Query 9339 GGCATACCACCAGCACT---GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 | ||| |||| | |||| ||||| | | ||| || |||||||| || || Sbjct 486290 CCTGTTCCAAAAGCATTATCACGTTTTTTTCCTATAGTATCTATTTCATCAATAAAAACT 486231 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG--GCGCCCA 9453 ||||| || ||||||| ||| || ||| ||||| | | |||| | || |||| Sbjct 486230 ATACACGGAGCTTTTTCGCTGGCTTGTTTAAACAGATCCCTGA--CTTTGGCCGCTCCCA 486173 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9512 || |||||||| | ||||| | | | | | |||| | ||| || || |||| Sbjct 486172 TTCCGACAAACATTTGAACAAATTCCGAACCTG-ATATTGCAAAGAAAGGAACTTTAGCC 486114 Query 9513 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || |||| |||| || | |||||| || || || || || Sbjct 486113 TCGCCGGCAACTGCTCTTGCCATAAGAGTTTTGCCGGTTCCCGG 486070 >seq211 Length=1809889 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 105907 AAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTC 105966 ||| ||||| | || |||||| ||||||||||| ||||| || ||||| |||| Sbjct 922617 AAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAAGATTC 922558 Query 105967 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTG 106024 ||| || ||||| ||||| || ||||| || || ||||| || || | | ||||| | Sbjct 922557 ATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGCAAGAAGCAAAGA--G 922500 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCT 106082 || |||| ||| | | || |||| ||| ||| || |||||| | || | | | Sbjct 922499 TTGCGAACACCATGCTGTGCAATACGTTTCTTCAGATCAGCCCAGTCCCACAGGTCTG-T 922441 Query 106083 TGGTTTCACCTTCCCACATATCAAATTGAAG 106113 |||| | || || |||||| ||| | ||||| Sbjct 922440 TGGTGTGACATT-CCACATGTCATACTGAAG 922411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589797964950080