Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq1094 123 9e-24 seq2441 111 6e-20 seq1802 111 6e-20 seq2787 109 2e-19 seq126 96.9 1e-15 >seq1094 Length=2708314 Score = 123 bits (136), Expect = 9e-24 Identities = 224/328 (68%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 212 GACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCTA 271 |||||| ||| || || | ||| |||| |||||||||||| |||||| |||| Sbjct 246821 GACTATGCTCCGGAGGTTTTGGAAGCTTTTGATAACAAACATCCGGAAAATGATTATTGG 246880 Query 272 GTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTC 331 |||| ||| | | || || || | | || || | || || ||||| ||||| Sbjct 246881 GTAAGATTCAATTGCCCAGAGTTTACCAGCTTGTGTCCAATTACCGGTCAGCCCGACTTT 246940 Query 332 GCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAAA 391 || | | || || || | || | ||||||||| ||| ||| || ||| Sbjct 246941 GCCGAAATCCGTATCAGCTATTTGCCTGATATAAAGATGGTGGAAAGCAAAAGCTTAAAA 247000 Query 392 TTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATT 451 ||||| | ||||| || ||||| || |||| ||| ||||||||||| |||| || ||| Sbjct 247001 TTGTATCTTTTCAGCTTTCGTAATCATGGTGCCTTTCACGAAGATTGTGTGAATATAATT 247060 Query 452 TTGAATGACTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACT 511 |||| ||| || | || ||||| | || || |||||||| || | ||| | || ||| Sbjct 247061 ATGAAAGACCTGATTAAACTGATGAATCCCAAATACATTGAGGTAACAGGCATCTTTACT 247120 Query 512 CCTCGTGGTGGAATTTCAATTTACCCAT 539 || || || || || || |||||||||| Sbjct 247121 CCCCGCGGCGGTATCTCTATTTACCCAT 247148 >seq2441 Length=2995558 Score = 111 bits (122), Expect = 6e-20 Identities = 203/295 (69%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 244 TAACAAACATCCTGAAAATAATTACCTAGTAACATTTGACGGATATGAATTCACTTCCCT 303 ||||||||| || |||||| ||||| ||| ||| || | |||||| || || Sbjct 1023367 TAACAAACACCCCGAAAATGATTACTGGGTACAATTCAACTGCCCTGAATTTACAAGTCT 1023308 Query 304 TTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGTTACATTCCAAACGA 363 ||||||| ||| ||||||||||| || ||| | | || || || ||||| || Sbjct 1023307 ATGCCCTATAACCGGACAGCCTGATTTTGCGGAGATACGTATCAGCTATATTCCGGACAT 1023248 Query 364 AAAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGA 423 ||| ||||| ||| ||| ||||| | ||| | ||||| |||||||| ||||||| Sbjct 1023247 AAAAATGGTAGAAAGCAAAAGCCTGAAACTATACCTGTTCAGCTTCCGTAATCACGGTGC 1023188 Query 424 CTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAA-TTGATGGAACCTA 482 ||| || |||||||| | ||||| || |||| || || || || ||||| | || | Sbjct 1023187 CTTTCATGAAGATTGTGTAAACATCATCATGAAAGA-TTTAATAAAGCTGATGAATCCGA 1023129 Query 483 AGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTCAATTTACCC 537 | || || || || | || | || || || | ||||| || || || || || Sbjct 1023128 AATATATAGAGGTAACAGGTTTGTTTACACCCAGAGGTGGGATATCCATATATCC 1023074 >seq1802 Length=645375 Score = 111 bits (122), Expect = 6e-20 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 290 GAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGT 349 ||||| || ||||||||| | ||| ||||| || ||||| || | | || | Sbjct 525670 GAATTTACAAGCCTTTGCCCGATAACCGGACAACCGGACTTTGCAACCATACATATCAAC 525729 Query 350 TACATTCCAAACGAAAAGATGGTTGA-ATCTAAATCATTGAAATTGTACTTATTCAGTTT 408 ||| | || | | ||||||||| || | | | | | | |||| | ||| | |||||||| Sbjct 525730 TACCTGCCGGATGTAAAGATGGTAGAGAGCAAGAGCCT-GAAACTTTACCTTTTCAGTTT 525788 Query 409 CCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGA 468 ||| || || || | ||||||||||| || | ||||| || |||| ||| || || Sbjct 525789 CCGCAATCATGGAGCTTTCCACGAAGACTGTGTCAACATCATAATGAAAGACCTGATTGC 525848 Query 469 ATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATT 526 ||||||| | |||||||||||||| || | ||| | |||||||| || || || ||| Sbjct 525849 ATTGATGAACCCTAAGTACATTGAGGTAGTCGGCATTTTCACTCCACGCGGAGGGATT 525906 >seq2787 Length=1710943 Score = 109 bits (120), Expect = 2e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 301 CCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGTTACATTCCAAA 360 ||||||||| | ||| |||||||| ||||| |||| | | | || | ||| | || | Sbjct 686120 CCTTTGCCCGATAACCGGACAGCCCGACTTTGCGACTATATATATCAATTATCTGCCGGA 686061 Query 361 CGAAAAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGG 420 | ||||||||| ||| ||| | ||||| || | ||||| || ||||| || || Sbjct 686060 TGTAAAGATGGTGGAAAGTAAGAGTCTAAAATTATATATGTTCAGCTTTCGTAATCATGG 686001 Query 421 TGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAATTGATGGAACC 480 | || |||||||| || | || || || |||| || || | ||||||||||||| Sbjct 686000 AGCTTTTCACGAAGACTGTGTCAATATCATCATGAAAGATCTGATTAAATTGATGGAACC 685941 Query 481 TAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAAT 525 ||||| || ||||| | || | || ||||| ||||| ||||| Sbjct 685940 GAAGTATATAGAAGTAGTTGGTATTTTTACTCCGCGTGGAGGAAT 685896 >seq126 Length=3533043 Score = 96.9 bits (106), Expect = 1e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 245 AACAAACATCCTGAAAATAATTACCTAGTAACATTTGACGGATATGAATTCACTTCCCTT 304 || ||||||||||||||| |||| ||| ||| | | ||||| || | Sbjct 511587 AATAAACATCCTGAAAATGATTATTGGGTACATTTTAATTGCCCGGAATTTACCAGTTTA 511646 Query 305 TGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGTTACATTCCAAACGAA 364 ||||||| || ||||| || |||||||||| || ||||| ||| ||||| | | Sbjct 511647 TGCCCTATTACCGGACAACCAGACTTCGCGACAATTCTCATTGATTATATTCCCGATTTA 511706 Query 365 AAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGAC 424 || ||||| ||| |||| | ||| | || | || ||||| |||||||| || | Sbjct 511707 AAAATGGTAGAAAGTAAAAGTCTAAAACTCTATCTTTTTAGTTTTCGTAACCATGGAGCT 511766 Query 425 TTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAATTGATGGAACCTAAG 484 || || || ||||| | || ||||| |||| || || || ||||||| || || Sbjct 511767 TTTCATGAGGATTGTGTCAATATTATAATGAAAGATTTAATAGAGCTGATGGACCCAAAA 511826 Query 485 TACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAAT 525 || |||||||| | || |||| ||||| || || || || Sbjct 511827 TATATTGAAGTGACCGGGATATTTACTCCCCGAGGAGGTAT 511867 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 10503 AAAGTTTACATCATTGACGAGGTTCATATGCTTTCAACCGGAGCATTTAATGCGCTGTTG 10562 ||||| || |||||||| ||||| |||||||| || || | |||||||||||| | ||| Sbjct 896000 AAAGTCTATATCATTGATGAGGTACATATGCTGTCTACAGCGGCATTTAATGCGTTTTTG 895941 Query 10563 AAAACATTAGAAGAGC--CCTCAT 10584 |||||| | ||||||| |||||| Sbjct 895940 AAAACACTCGAAGAGCCGCCTCAT 895917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180644401723072