Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq179 190 2e-43 seq2330 150 2e-31 seq1702 150 2e-31 seq2441 120 4e-22 seq1535 118 1e-21 seq126 114 2e-20 seq76 111 2e-19 seq788 104 3e-17 seq1232 98.7 1e-15 seq875 93.3 5e-14 >seq179 Length=2312354 Score = 190 bits (210), Expect = 2e-43 Identities = 393/569 (69%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 159232 GGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGAT-ATCACAGGGTTTGA 159290 |||||||| |||| ||| | || | | ||||| | || || || ||||| |||| Sbjct 1074348 GGTTATCAGGAAATGATAAAAGAACTTGA-AAATGATCTTGCAATTATAACAGGATTTGC 1074290 Query 159291 TTCTATATCATTACAACCTAACGCAGGATCACAG-GGTGAGTATGCAGGACTGTTAGCAA 159349 | | ||| |||||||||| ||||| | ||| || || | | ||| | | | | Sbjct 1074289 AGCAACTTCACTACAACCTAATTCAGGAGC-CAGTGGCGAACACACCGGATTAATGGTTA 1074231 Query 159350 TCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGT 159409 || || ||| ||| || | ||||||| | | | ||| |||| |||| || | Sbjct 1074230 TCAGAGAATATCATAAATCAAGAGGAGATTCTCATCGTAATATATGCCTGATCCCTTCAT 1074171 Query 159410 CAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCA 159469 | || |||||||| ||||||||| ||||| |||||||| ||| || | || | ||| | Sbjct 1074170 CTGCCCATGGAACAAATCCTGCAAGTGCAGTTATGGCAGGCATGGAAATAGTTGTTGTAA 1074111 Query 159470 AGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAA-- 159527 | ||||||| | || || || || | ||||| | || ||||| | |||| Sbjct 1074110 AAAGTGATGAAAAAGGAAATATCGATGTTGAAGATTTCAAGGCAAAAGCTAC--TGAACA 1074053 Query 159528 TACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAAC 159587 || | | | || | || ||||| |||||||| ||||| ||||| || ||||||| Sbjct 1074052 TAAAGATAAGCTTGCTGCTACAATGATAACATATCCGTCTACCCATGGAGTTTTTGAAAG 1073993 Query 159588 AA--ACATCAGACA-GATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGA 159644 | | || ||| | |||| || || |||||||| || || || || |||||| | || Sbjct 1073992 CAGGATATTAGAGATGATA---AAAATAGTTCATGACAACGGAGGACAAGTATATATGGA 1073936 Query 159645 TGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATG 159703 |||||||| | ||||| ||||| || || |||| || | ||| || ||||| | Sbjct 1073935 CGGTGCAAACATGAATGCCCAGGTTGGACTTACAAATCCCGGATT-TATCGGAGCAGACG 1073877 Query 159704 TATGTCATCTAAACTTACATAAGACATTCTGTAT-TCCACATGGAGGTGGAGGTCCTGGC 159762 |||| ||| |||| |||||||| || || || | ||| || || ||||| ||||||||| Sbjct 1073876 TATGCCATTTAAATTTACATAAAACTTT-TGCAGGTCCTCACGGTGGTGGTGGTCCTGGC 1073818 Query 159763 GTAGGTCCTATTGGTGTAGCAAAACATCT 159791 || |||||||| |||||||| ||||||| Sbjct 1073817 GTTGGTCCTATATGTGTAGCAGAACATCT 1073789 >seq2330 Length=1066040 Score = 150 bits (166), Expect = 2e-31 Identities = 185/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 159549 TATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAA 159608 |||||| || ||||| ||||| |||||| | || || | | | ||| | | || ||||| Sbjct 691004 TATGATCACCTATCCGTCTACTCATGGTATCTTCGAGAAAGAAATCCGGGAAATGTGTAA 690945 Query 159609 GATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 |||||| || | | || || || |||||| | ||||| |||||| | ||||| ||||| Sbjct 690944 GATTGTACACCAACACGGAGGACAAGTATATATGGATGGAGCAAATATGAATGCGCAGGT 690885 Query 159669 AGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGAC 159728 || ||| | || || | | |||||||||||| ||||| || || | ||||| || Sbjct 690884 CGGACTAACCAACCCCGGCTATATTGGTGCAGATGTTTGTCACCTCAATCTGCATAAAAC 690825 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACA 159788 ||| |||||| ||||| ||||| || || || | ||| ||||| ||||||| |||| Sbjct 690824 ATTTGCTATTCCTCATGGTGGTGGTGGACCGGGTGAAGGCCCTATCTGTGTAGCGGAACA 690765 Query 159789 TCTCACACCATTT 159801 ||| | |||||| Sbjct 690764 TCTTATTCCATTT 690752 >seq1702 Length=707479 Score = 150 bits (166), Expect = 2e-31 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 159549 TATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAA 159608 ||||||||| || || |||||||||||| | || |||| | | ||||| | || ||| | Sbjct 621772 TATGATTACTTACCCTTCTACACATGGTATTTTCGAAAAAGAGATCAGGAAAATGTGTGA 621831 Query 159609 GATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 ||| || ||| | |||||| ||||||||| | || || |||||| | ||||||||||| Sbjct 621832 GATAGTACATCAATTTGGTGGACAGGTATATATGGACGGGGCAAATATGAATGCACAGGT 621891 Query 159669 AGGTCTAGCAAAACCATG-TGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGA 159727 ||| || | || || | | || ||||| || || || || || || |||||||||| Sbjct 621892 AGGCCTTACCAATCCGGGCTTTATA-GGTGCTGACGTTTGCCACCTCAATTTACATAAGA 621950 Query 159728 CATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAAC 159787 |||| || || || || || || ||||| |||| ||| ||||| |||||||| ||| Sbjct 621951 CATTTGCCATCCCTCACGGCGGCGGCGGTCCGGGCGAAGGACCTATATGTGTAGCAGAAC 622010 Query 159788 AT 159789 || Sbjct 622011 AT 622012 >seq2441 Length=2995558 Score = 120 bits (132), Expect = 4e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||||||||||| || || || || || | || ||||| | ||| | | || ||| | Sbjct 368287 ATGATTACATACCCTTCCACTCACGGCATTTTCGAAACTGAAATCGTAGAAATTTGTGAT 368346 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 | | || || || | |||||||| | |||||||| ||| | ||||| |||||| Sbjct 368347 TTCATACACAAGTGCGGAGCACAGGTATACATGGATGGTGCCAATATGAATGCGCAGGTA 368406 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 || || | || || | | ||| ||||| |||||||| || ||||||||||| ||| Sbjct 368407 GGACTGACTAACCCCGGATTCATTGGAGCAGACGTATGTCACCTGAACTTACATAAAACA 368466 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACAT 159789 || | ||||||||| || || || || || ||||| ||||| ||||||| ||||| Sbjct 368467 TTTGCTTCTCCACATGGCGGAGGCGGCCCGGGTGTAGGGCCTATATGTGTAGCCGAACAT 368526 Query 159790 CTCA 159793 |||| Sbjct 368527 CTCA 368530 >seq1535 Length=1988416 Score = 118 bits (130), Expect = 1e-21 Identities = 188/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 159536 AACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA 159595 ||||| || | |||||| ||||| || ||||| || || | |||||| | | |||| Sbjct 337543 AACTGGCAGCAAGTATGATAACATACCCTTCTACTCACGGAATTTTTGAAGCTGATATCA 337484 Query 159596 GACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATC 159655 | | || ||| | ||| ||||| ||||| || |||| | ||||| || || Sbjct 337483 AAAAAATGTGTGATATTATTCATAGTTGCGGTGGACAAATATACATGGATGGCGCCAACA 337424 Query 159656 TAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAA 159715 | ||||| ||||| ||| || | || || | | | ||| || |||||||||||| ||| Sbjct 337423 TGAATGCTCAGGTGGGTTTAACCAATCCGGGAGTCATTGGAGCTGATGTATGTCATTTAA 337364 Query 159716 ACTTACATAAGACATTCTGTAT-TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATT 159774 | ||||||||||||| || || ||| || || ||||| || || || || || ||||| Sbjct 337363 ATCTACATAAGACATT-TGCATCTCCTCACGGTGGTGGTGGACCGGGTGTTGGACCTATA 337305 Query 159775 GGTGTAGCAAAACATCTCACACCATTT 159801 | |||||| |||| | | ||| ||| Sbjct 337304 TGCGTAGCATCACATTTAAAACCTTTT 337278 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 157986 || ||||| |||| || || ||||| || || ||||||||||| || ||||| || Sbjct 339176 CGTAACGTATTTGAAAACCCCGTCTGGTATACCTCATACACTCCCTACCAGGCTGAAATT 339117 Query 157987 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGA 158046 ||||||||| | || ||||||||||| || | || || | | || || |||||| Sbjct 339116 TCTCAGGGACGTTTAGAAGCTTTATTGAACTTTCAGACAATGGTTTGTGATCTAACAGGA 339057 Query 158047 CTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 158099 || || || ||||| ||| |||| |||||||| ||||| || || ||||| Sbjct 339056 CTTCCACTAACAAACTGCTCTTTATTGGATGAAGCTACTGCTGCTGCTGAAGC 339004 >seq126 Length=3533043 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| || | Sbjct 166393 GAAATGTTTTTGAAAATCCAGCATGGTACACTTCTTACACTCCCTATCAAGCTGAAATTT 166452 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 |||| || | ||||||| || | |||| |||||| | | | || | ||||||| Sbjct 166453 CTCAAGGCCGTCTGGAAGCCTTGCTTAATTTCCAAACAATGGTAAGTGATTTAACAGGAC 166512 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCA 158100 | || | |||||| ||| |||| || ||||| || || || ||||||||| Sbjct 166513 TTCCCTTGGCAAACTGTTCTTTATTGGACGAAGCTACAGCTGCTGCAGAAGCA 166565 >seq76 Length=2859269 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||| || | || || | || ||| |||| || ||||| |||||||||||||| || ||| Sbjct 1828008 GGTCATGATGCTTATCGCTTGGCATTACAAACAAGAGAACAGCATATCAGAAGGGATAAA 1828067 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 |||||||| |||||||| || ||||| ||| |||| || |||||||||| | ||||| Sbjct 1828068 GCAACCAGCAACATCTGTACTGCACAGGCATTGCTAGCAAATATGTCTGCAATGTATGCT 1828127 Query 158680 GCATATCATGG 158690 | |||||||| Sbjct 1828128 GTTTATCATGG 1828138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 159632 AGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACT 159691 |||| || || |||||||| ||| | ||||| || ||||| | ||| | || | Sbjct 1862228 AGGTCTACCTGGATGGTGCTAATATGAATGCCCAAGTAGGGTTGTGTCGGCCAGGAGATT 1862287 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 |||| | ||||| | |||||| || | || ||||||||||| || || ||||| || | Sbjct 1862288 ATGGATCTGATGTTTCTCATCTGAATCTTCACAAGACATTCTGCATACCTCATGGTGGGG 1862347 Query 159752 GAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | ||||| || | ||||||||||| || Sbjct 1862348 GTGGTCCAGGAATGGGTCCTATTGGAGT 1862375 >seq788 Length=584067 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||||||| |||| ||| | | ||||||||| |||||||||| ||||| || || || | Sbjct 331309 GAAACGTTTTTGAAAATGCAGGCTGGTACACAGCTTACACTCCTTATCAGGCGGAAATTT 331368 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 |||| || | ||||||||||| || |||| || || | || | || | || Sbjct 331369 CTCAAGGTCGTTTGGAAGCTTTGTTGAATTTTCAGACAATGATTTCGGATTTAACTTCTT 331428 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAG 158092 |||| || ||||| || ||| ||||||||||||| || || |||| Sbjct 331429 TACCCATCGCAAATGCTTCTTTATTAGATGAAGCTACAGCGGCAG 331473 >seq1232 Length=396718 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| ||| |||| |||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 28935 GAAATGTTTTTGAAAATCCTGTCTGGTATACATCTTATACTCCATATCAGGCAGAAATAT 28994 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 | || || ||||| || ||||| | |||| || || | ||| || || |||| | Sbjct 28995 CGCAAGGCAGATTAGAGGCTTTGCTGAATTTTCAGACAATGGTCAGTGATCTTACAGCAT 29054 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 158099 |||| | | || ||| || | ||||||||||| ||||| |||||||| Sbjct 29055 TACCATTGACCAATTGTTCTTTACTGGATGAAGCAACAGCAGCTGCAGAAGC 29106 >seq875 Length=1099013 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 157921 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 157980 || || || || || |||| |||||| |||||| ||||| || || || ||||| ||| Sbjct 907403 ATTCAACGCAATGTATTTGAAAATCCTGTTTGGTATACATCATATACACCTTATCAGGCT 907462 Query 157981 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTC 158040 || | || ||||| | || ||||| ||| | || | ||| || | ||| || || Sbjct 907463 GAAGTTTCCCAGGGGCGCTTAGAAGCATTACTTAACTTCCAGACTGTTATCTGTGACCTA 907522 Query 158041 ACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 158099 |||| ||||| | ||||| ||| | ||||||||||||||||| || || ||||| Sbjct 907523 ACAGCTCTACCTCTTACAAACTGTTCTTTGTTAGATGAAGCAACTGCTGCTGCTGAAGC 907581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 158434 GGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTT 158493 || |||| ||| | ||||||||||| ||| || ||||||||| ||| | | ||| Sbjct 907925 GGAAGTAGCCAACGCTTTGGTATTCCGATGTTTTATGGAGGTCCTTCTGCCGGTTATTTT 907984 Query 158494 GCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGAT 158553 ||||||| ||| | ||||| | ||||| || ||||| ||||| || |||| Sbjct 907985 GCAACAAAAGATGAATATAAACGCGCTATACCCGGAAGAATCATAGGTATCTCCAAAGAT 908044 Query 158554 AGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGA 158613 | || || || ||||||||||| ||||| || | || || || |||| | | Sbjct 908045 GCTTACGGACATGCCGCTTACAGATTAGCCCTACAAACCCGCGAACAACACATCAAACGT 908104 Query 158614 GACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTC 158673 || ||||| || || || || ||||| || || || | || | ||| | || || Sbjct 908105 GAAAAAGCGACTTCAAATATATGTACAGCCCAGGCTTTGTTAGCAACAATGGCCGGTTTT 908164 Query 158674 TATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 || || | ||| || ||||| || || || | | |||||| Sbjct 908165 TACGCTGTATACCACGGTGCTGAAGGTTTAAAAGATATAGC 908205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587868962933120