Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1094 95.1 1e-14 seq2330 82.4 9e-11 >seq1094 Length=2708314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 104899 CAAATCTATCGTATTGATCATTATCTCGGTAAAGATACTGTCAGTAATATTCTTGCAACT 104958 |||||||||||||| || |||| ||||||||||| |||| | ||||| ||||| Sbjct 1057214 CAAATCTATCGTATAGACCATTTCCTCGGTAAAGAAACTGCCCAGAATATGCTTGCTTTC 1057155 Query 104959 CGCTTTTCCAATACAATCCTTGAACCTCTTTGGAATAGAGATTATATTGAAGAAGTGCAG 105018 || ||| ||||| ||| ||||||| || ||||| || |||| ||||| | || | Sbjct 1057154 CGATTTGCCAATGGTATCTTTGAACCACTATGGAACAGGAATTACATTGACTATGTCGAA 1057095 Query 105019 ATATAC-GCAACCGAAACTATTGGATGCGAAGGTAGATCTCAG--TATTATGATGGATCG 105075 || ||| ||| |||| | | ||| ||||| | | || |||||||| ||| Sbjct 1057094 AT-TACAGCAGTTGAAAATCTGGGAATTGAAGGACG--CGGAGGCTATTATGACACATCA 1057038 Query 105076 GGTGTTGTTCGTGATATGTTACAGAACCATATGCTTCAGGTTCTTGCACTCACTACTATG 105135 || | | | || |||||| |||| || ||| | | || | ||||||| ||| ||||| Sbjct 1057037 GGCGCTTTGCGAGATATGGTACAAAATCATTTAATACAATTAGTTGCACTGACTGCTATG 1056978 Query 105136 GA 105137 || Sbjct 1056977 GA 1056976 >seq2330 Length=1066040 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 104899 CAAATCTATCGTATTGATCATTATCTCGGTAAAGATACTGT-CAGTAATATTCTTGCAAC 104957 || || |||||||| ||||||||||| ||||| || ||||| ||| ||||| | | ||| Sbjct 485594 CAGATTTATCGTATCGATCATTATCTGGGTAAGGAGACTGTACAG-AATATGTTGGTAAC 485536 Query 104958 TCGCTTTTCCAATACAATCCTTGAACCTCTTTGGAATAGAGATTATATTGAAGAAGTGCA 105017 || ||| |||||| ||| ||||||| | |||||| | ||||||| | | ||| | Sbjct 485535 ACGTTTTGCCAATAGTATCTATGAACCTTTGTGGAATCGTAATTATATCCATCATGTGGA 485476 Query 105018 GATATACGCAACCGAAACTATTGG 105041 ||| ||| | |||| ||| || Sbjct 485475 AATAACGGCAGCAGAAAGTATAGG 485452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563486121518080