Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq783 129 4e-25 seq2315 107 1e-18 seq1551 86.0 4e-12 >seq783 Length=580412 Score = 129 bits (142), Expect = 4e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| |||||| |||||||| ||||| || ||| ||||| |||| || | Sbjct 390108 CAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGTCCATCTTCAA 390049 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || |||||||| || | || || |||||| | || | || ||||| || || Sbjct 390048 GCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGAA 389989 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| |||||| | | || | || ||||||||| || | || |||||||| | Sbjct 389988 TCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTGATGGTTTTGC 389929 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||||||||| |||||||| Sbjct 389928 CAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | || | |||||||| | ||| ||| ||||||||||| ||||| || Sbjct 391351 CCACCCCTGAGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGAC 391292 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||||| |||| || || ||||| || ||||| || || || ||||| ||| | || Sbjct 391291 AGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 391232 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||| || ||| || | | || | || |||||||| Sbjct 391231 ATGCCCTCCTTATCCTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACT 391172 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || |||||||| || || | |||||| || || ||||||||| Sbjct 391171 TCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCATA 391124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || ||||| |||| | || || ||||| || || ||||| Sbjct 390320 TTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 390261 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || |||||| | || | || |||||||| ||| || |||||| | Sbjct 390260 GATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTGGCTTTGAC--A 390203 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || ||||| || || | || || ||||| || || ||||| || Sbjct 390202 TTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTT 390143 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 390142 ACAAAAATCTGCAT 390129 >seq2315 Length=138946 Score = 107 bits (118), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||||||||| ||||| | ||| |||| ||||||||||| || || || | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | || ||||| || | || | |||||| ||||| ||| || ||| || || Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTAC--ATT 26850 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | || || || | |||||||||||| || || ||||| ||||| Sbjct 26849 CTCAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCAC 26790 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 26789 AAAAATCTGCAT 26778 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || ||||| || |||||||| || | || |||| |||| ||||||||| ||||| ||| Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| ||||||||| | || | || || ||||| |||||| || || | | Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 29029 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| | || || || | || ||||||||||| ||||| ||||||||||| Sbjct 29028 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 28969 Query 34974 ATCTGCAT 34981 |||||||| Sbjct 28968 ATCTGCAT 28961 Score = 98.7 bits (108), Expect = 6e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || ||||| || |||||||| || | || |||| |||| |||||| || ||||| ||| Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| ||||| ||| | || | || || ||||| |||||| || || | | Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 27588 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| | || || || | || ||||||||||| ||||| ||||||||||| Sbjct 27587 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 27528 Query 34974 ATCTGCATA 34982 ||||||||| Sbjct 27527 ATCTGCATA 27519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || || || ||||| | || |||| || |||||||| || ||||| Sbjct 33183 TCTTTCTGAATATTGTAATCTGAAAGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAA 33124 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | |||||||| || |||||| ||| || || Sbjct 33123 ATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATCTTTGCTTTTAC--AT 33066 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || || || | || || || ||||| || | ||||||| Sbjct 33065 TCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCA 33006 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 33005 CAAAGATCTGCAT 32993 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || || || |||||||| || | || |||| |||| |||||| || ||||| | Sbjct 28211 CTTTTTGGATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAA 28152 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 ||| ||| ||||| ||| | || | || || ||||| ||| || || || | Sbjct 28151 TTAATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCCTTTACATTTT 28092 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| | || || || | || |||||||| || ||||| |||||||||| Sbjct 28091 CAATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTGCCTGTGAGGGTCTTCACAA 28032 Query 34972 AGATCTGCATA 34982 | ||||||||| Sbjct 28031 ATATCTGCATA 28021 >seq1551 Length=444118 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||||| ||||||| |||| |||| |||||||||||| || ||||| || Sbjct 25341 CCACCTCTCAACCGGAAAACCAGATGAAGTGTGGATTCTTTCTGAATATTGTAGTCTGAC 25400 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || ||||| || |||||||| || | || || |||||| | || Sbjct 25401 AATGTTCTTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGAGGA 25460 Query 34875 ACCCCCTCCTTG 34886 | || |||||| Sbjct 25461 ATGCCTTCCTTG 25472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324535511146176