Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq714 161 1e-34 seq211 141 1e-28 seq263 114 1e-20 seq494 91.5 2e-13 >seq714 Length=734366 Score = 161 bits (178), Expect = 1e-34 Identities = 165/214 (77%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 19206 ATACATACGCT-CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 |||||||| | | | || |||| ||| ||||| |||||| | || |||||||||||||| Sbjct 47730 ATACATACCTTTCTTTTGGATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTG 47789 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||||| |||||| || || || ||||| || || ||||||||||||||||| | |||| Sbjct 47790 AATGAACATTTTCCATTGCAATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTA 47849 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | |||||||| || | |||||||| || |||||||| |||||||| | Sbjct 47850 CTTCTTGGCTGAATCTTTCTACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGA 47909 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 |||| | ||| ||| || ||||| ||||||| Sbjct 47910 ATGCAAGTACGTGTGATATGAAATGCCTTTCATC 47943 Score = 152 bits (168), Expect = 6e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 |||||||| || || || || || ||||| ||||||||||| || | |||||| || Sbjct 43916 ATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCTTCAGCCAGAAAATT 43975 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 |||||||| || || ||||| ||||| || ||||| ||||| || || | ||| || Sbjct 43976 GAAGCAAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATGCTACCACTCTCTCG 44035 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||||| | ||| || ||| |||||| | || |||||||| || |||||||||||| Sbjct 44036 CCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTGCTTTCTTTTTTACA 44095 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| || |||| |||||||| ||| Sbjct 44096 CACGGCATTGTTTCAATAGCATTAAATAAATA 44127 Score = 109 bits (120), Expect = 6e-19 Identities = 125/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 |||| |||| ||||||||||||||||| ||||||| || || || || |||||||| || Sbjct 55180 AATACCTTT-GATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTA 55238 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttct-t 19561 ||| | ||| ||||| |||| || |||||||| || |||||||| || ||| ||| | Sbjct 55239 CATTTGCCAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATTCTCTCT 55298 Query 19562 taagaataggttccattttttgaaaaataataatttcttttca 19604 ||| || |||||| | || || | ||| |||||||||| Sbjct 55299 TAATAA-AGGTTC--TAATTCGATATCAAATGTTTTCTTTTCA 55338 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 18604 TGTTA-TGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTAC 18662 ||||| | ||||||||||| ||||||| | ||| ||| ||||| || | ||| || Sbjct 38259 TGTTAGTAGTTAAAAATCAGCATCCAATGTGAAAACATTTTCTTCTTTCTTAGCCATCAC 38318 Query 18663 TCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGA 18722 || ||| ||||| || ||||| | || || |||||||| || || || || ||||| Sbjct 38319 ACCACATTTCTGATACTCTCCAACTTTCTTCTCGAAGAAATTCGTCTTGCCTTCCAATGA 38378 Query 18723 TATACATTCCATAAAATCAAATGGATTTT 18751 ||| |||||| || || || ||||||| Sbjct 38379 TATGTGTTCCATGAAGTCGAACGGATTTT 38407 >seq211 Length=1809889 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47046 AAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGA 47105 || ||||| ||||||| |||||| || ||||| ||| |||| |||| |||||| Sbjct 926036 AAGCTCCAAGCATAGAAGTGCATAGACGTCAATTTTCCATAGTTAGGCTCTGCTATATGA 925977 Query 47106 ATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATA 47165 || || ||||||||||||||||||||||||||||||| |||||||||||| | | |||| Sbjct 925976 ATGTTCAGAGATTGACTCTGATCAATAAATGCACCTCGATCAGCTGCCATCTTAACAATA 925917 Query 47166 ACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||||| |||||||| || || ||||| | | ||| | ||| | ||| Sbjct 925916 ACTTTTTGTGAGATCTCCCACACAGTCTTATATAAATCTTTTAGGTCCTGTGG 925864 Score = 113 bits (124), Expect = 5e-20 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 48913 CATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTA 48972 || |||| || ||||||| ||||||||||||||||| || |||| |||||||| || | Sbjct 905023 CACCACTGAAGGTTTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAA 904964 Query 48973 ATATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATA 49031 ||||||||||||||||| ||||||| ||| ||| || | |||| || |||| || Sbjct 904963 GAATAGCATAATCTGGATGCTTTGTTGT-CATCGTAGCAGCTGTTTCAGCAGCTAGATTA 904905 Query 49032 TCTAATTCTTTAGTAGTTACACCTGTATATA 49062 || ||||| ||| ||||| || | ||||| Sbjct 904904 TCCAATTCAACAGTTGTTACTCCAGCATATA 904874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| | || || || |||| ||||| || | |||| Sbjct 922619 TGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAAGAT 922560 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAA 47436 ||||| ||||| || ||||||||||| || || |||||||||| |||| Sbjct 922559 TCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGCAA 922511 >seq263 Length=1740189 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 65881 TTTCAAGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTT 65940 |||| ||||| ||||| | |||||| | ||||||||| || || |||||||| | Sbjct 1460494 TTTCCTGATATAGTAGAATGCTGTGAAGAAATGGCAAATCTTGGGAAGATAGTGATCATA 1460435 Query 65941 GCAGCATTGGATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCA 66000 |||||||||||||| |||||| ||||| ||||||| | || | ||| | ||||| Sbjct 1460434 GCAGCATTGGATGGTACATTTCAAAGAGTTGGTTTTGGTTCTATACTGAATCTTGTTCCA 1460375 Query 66001 TTATCTGAAACAGTAACAAAACTTACAGCTGTGTGTATGAAATGTTTTAAAGATGCATCT 66060 | ||||| | ||| ||| | | ||||||||||||| |||| | ||||| || Sbjct 1460374 CTGTCTGAGAATGTAGTGAAATTAAGTGCTGTGTGTATGATTTGTTATGGGGATGCTGCT 1460315 Query 66061 TTTTCAAAACGTATAGGTACAGAAACAGAGATA 66093 | | |||| | |||||| | ||||| ||| || Sbjct 1460314 TATACAAAGAGAATAGGTTCTGAAACGGAGGTA 1460282 >seq494 Length=1477545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 136657 GGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGAATATTTGC 136716 ||| ||| ||||| | ||||| || | ||| | || |||| |||||||||||| | | | Sbjct 1189286 GGCTGAAGCATGTAAGTCTGTGGAGTATGCAATGAAGAAGTGTCCAAATGGAATGTATTC 1189227 Query 136717 AGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAA 136764 |||||||| || || ||||| || || |||||||||||||| ||||| Sbjct 1189226 TGAAATAAAGTACGATGGAGAGCGAGTCCAGGTTCACAAGAAAGGAAA 1189179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561934602482880