Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_018278.1 Length=42832 Score E Sequences producing significant alignments: (Bits) Value seq2340 80.6 7e-11 >seq2340 Length=108680 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 3004 GGCGATTGGGACGTTACCGCAGGCGGCGCGATTGACGACGTTTGGCAATCGC-ATATTCA 3062 ||||| ||||| | |||||||||||| | |||||| | ||| || ||| | | || Sbjct 16253 GGCGACTGGGATATCGTGGCAGGCGGCGCGTTCGACGACATCTGG-AAGCGCGACACGCA 16195 Query 3063 TGTCGTGCCGCGCTTCGTTGTGCCGCCAAGCTGGCGCATCGACCGCACTTACGACGACGG 3122 ||| |||||||||| | || ||||||||||||||||||| | | |||| || Sbjct 16194 TGTTTTGCCGCGCTTTCAGATACCTTCAAGCTGGCGCATCGACCGATCGTTCGACTGGGG 16135 Query 3123 TTCAAGCCATCCGTTTAGTGTGGGCTGGTGGGCGGAAGCGGACGGGACCGA 3173 ||| | ||||| |||||||||||||||||| ||||| || || Sbjct 16134 CAGCAGCAAACCGTTCTCGGTGGGCTGGTGGGCGGAAAGTGACGGCACGGA 16084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136900483943776