Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq783 129 4e-25 seq2315 116 3e-21 seq1103 89.7 4e-13 >seq783 Length=580412 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| |||||||| || ||| |||| |||| || | |||||| || ||||| Sbjct 390319 TCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAG 390260 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | ||||| ||| |||||||| ||| || ||| ||| Sbjct 390259 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTC 390200 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| || |||| ||||| ||||| || || | |||||||||| Sbjct 390199 TCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACA 390140 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 390139 AAAATCTGCAT 390129 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | ||| || || ||||||||||| ||||| || || || |||| Sbjct 390118 AGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGTTCGT 390059 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| || |||||| || | ||||| ||| ||| Sbjct 390058 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCC 389999 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| ||| | | | ||||| ||||| || || | || Sbjct 389998 TTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAGAGTG 389939 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||| || |||||||||||||| Sbjct 389938 ATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || | | |||||| || || ||| || || ||||| ||||| ||||| Sbjct 391352 GCCACCCCTGAGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGA 391293 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || || | || ||||| ||||| || || ||||| ||||| | || Sbjct 391292 CAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGG 391233 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||| || ||| || ||| ||| | | | ||||| ||||| || Sbjct 391232 AATGCCCTCCTTATCCTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAAC 391173 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||||||| || || ||||||||||| Sbjct 391172 TTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||||||||| || || ||| | | | || || | |||||| || ||||| | Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || |||||| || | ||||| ||| |||||||| |||||| ||| || Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | ||||| ||||| || |||| || || ||||| || || | ||||| || | Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367 Query 48757 AAATCTGCAT 48766 |||||||||| Sbjct 390366 AAATCTGCAT 390357 >seq2315 Length=138946 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| |||||||||||||| || || | ||| | || || Sbjct 33201 ACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAAAGTGTGCGACCATCCTCG 33142 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || ||||| || |||| ||| || || | || | |||||||| || | Sbjct 33141 AGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGA 33082 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||||||| | | | ||||| | ||||| |||| ||||| || ||| Sbjct 33081 ATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCTTT 33022 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 33021 CCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| || ||||||||||| || | || | || |||| ||||||||| ||||| | Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | |||| || ||||| | |||| || |||||||| |||||| ||||||| Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || | ||||| |||| || || |||||||| |||||||| || || | Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 48757 AAATCTGCAT 48766 | || ||||| Sbjct 27140 AGATTTGCAT 27131 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||||||||| || || || || || | || | || |||| ||| || || || || | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || ||| ||||| | |||| ||||| ||||| ||| ||| ||||||| Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || | |||||||| | || || ||||| || || | |||||| |||| Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 48757 AAATCTGCATCGTG 48770 ||||||||||| || Sbjct 26787 AAATCTGCATCCTG 26774 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 |||||||||||||| || || || | ||| | || |||||||| || || ||||| || Sbjct 27707 TTTTGAATATTGTAGTCCGACAGTGTGCGACCATCTTCCAACTGTTTGCCTGCAAAAATT 27648 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | |||||| ||||| | || | || || ||||| ||||||| |||||| | Sbjct 27647 AATCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 27588 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | || ||||||| || || |||||||| || | || || ||||| Sbjct 27587 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 27528 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 27527 ATCTGCAT 27520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 |||||||||||||| || || || | || | || |||||||| || || ||||| || Sbjct 29148 TTTTGAATATTGTAGTCCGACAGTGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAAATT 29089 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | |||||| || || | || | || || ||||| ||||||| |||||| | Sbjct 29088 AATCGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTTTCA 29029 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | || ||||||| || || |||||||| || | || || ||||| Sbjct 29028 ATGGTATCAGATGGTTCTACCTCCAGTGTGATGGTTTTTCCTGTGAGGGTCTTCACAAAT 28969 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 28968 ATCTGCAT 28961 >seq1103 Length=666263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 9066 GGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAA 9125 ||| || ||||| |||| ||| || | ||| || || || || || | || || ||||| Sbjct 219501 GGGGTAGAAGATCTGTTGACATATAAGTTGCGCTATTCTATCTCCTTCGTTAACAACAAA 219560 Query 9126 GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 || | || ||||||||||||||||| |||||||| ||||| | ||| || ||||| | Sbjct 219561 TTCAGAATCTGAATGATTGAACAGCACAACTCCCACATTACCACGGTAGTCTTCATCAAC 219620 Query 9186 CACACCAGC 9194 || ||||| Sbjct 219621 AACTCCAGC 219629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380822498751816